PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g12120
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 348aa    MW: 39105.2 Da    PI: 7.4293
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g12120genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151472148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...........TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...........kgRtlkqcksrwqkyl 48
                     rg W++eEde+l++ ++ +G g+W++++++ g           + R++k+c++rw +yl
        Tp3g12120 14 RGLWSPEEDEKLINHINTYGHGCWSSVPKHAGilthvyiygfcLQRCGKSCRLRWINYL 72
                     788******************************************************97 PP
2Myb_DNA-binding48.52.1e-1578120145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++++E  l+++++  lG++ W+ Ia++++ gRt++++k++w+
        Tp3g12120  78 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 120
                      899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-26675IPR009057Homeodomain-like
PROSITE profilePS5129414.862972IPR017930Myb domain
SuperFamilySSF466892.06E-2711119IPR009057Homeodomain-like
SMARTSM007173.1E-121374IPR001005SANT/Myb domain
PfamPF002491.5E-141472IPR001005SANT/Myb domain
CDDcd001673.86E-111772No hitNo description
PROSITE profilePS5129425.20973127IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2576128IPR009057Homeodomain-like
SMARTSM007171.5E-1577125IPR001005SANT/Myb domain
PfamPF002493.2E-1478121IPR001005SANT/Myb domain
CDDcd001672.54E-1180120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLINHIN TYGHGCWSSV PKHAGILTHV YIYGFCLQRC  60
GKSCRLRWIN YLRPDLKRGS FSPQEAALII ELHSILGNRW AQIAKHLPGR TDNEVKNFWN  120
SSIKKKLILL TNLPYHNGFN ATTGEDEGSR FMSNIITNTN PNFITPSHLP LPSPHVMTPL  180
MFPTCREGDF KFLTTTNTNQ SHQDNSLYNN LDILSAPPTI DNHRYLDNDP QWPALPDLPA  240
STISTFHETV QDYDDGNKLN VFVTPYNENG DPRSIPLVAT KLLCGQVLEG KVLSSSPISQ  300
DHALILPTTY SLQMPGDHQR VDSYINHMII PSSSSSSSPI SCGQYVIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30141277108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g12120
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1759971e-167AF175997.1 Arabidopsis thaliana putative transcription factor (MYB26) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407153.10.0transcription factor MYB26
SwissprotQ9SPG30.0MYB26_ARATH; Transcription factor MYB26
TrEMBLV4NPY30.0V4NPY3_EUTSA; Uncharacterized protein
STRINGXP_006407153.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128031930
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.11e-176myb domain protein 26
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  3. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]