PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g12280
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 505aa    MW: 56796.1 Da    PI: 4.9169
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g12280genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS259.41.3e-791455052374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilkfshlta 98 
                ++lL  cA a+++++ ++aq++L+ lselas+ gd+++Rlaa+ + AL+++++      ++a ++++ +   s+e+ +++k+   f+evsP++ + + +a
  Tp3g12280 145 EQLLNPCALAITARNSSRAQHYLCVLSELASSCGDANHRLAAFGLCALKNHIST-----SSASSSTTFA---SAEVKMFQKTllkFYEVSPWFALPNNMA 236
                689**************************************************9.....4444444444...3333333333446*************** PP

       GRAS  99 NqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                N+aIl+ +++e    + +Hi+D+++s+G+QWp+Ll+aL +Rp ++pp++RiT+v + +++          ++g++L+ fA++l+++++ +v+        
  Tp3g12280 237 NSAILQILAQEprdkKDLHILDIGVSHGMQWPTLLEALCCRPeGPPPRVRITVVFDLTEDipfsVGPPSYNYGSQLTGFARSLKINLQVSVI-------D 329
                **********99888889************************55667*********9999999888999*********************96.......5 PP

       GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvEre 288
                ++++++++p+E+l+V+ +++l++l     s+++er+e Lk+++sl+Pk +v++e++ ++ +s++F+ +f+++ley+++++ds++ ++    +e+++ Er+
  Tp3g12280 330 KFQRIDTSPHESLIVCTQFRLYQLK---NSINDERSEALKALRSLKPKGMVLCENNGECsSSGDFAGGFSRKLEYMWKFLDSTSYGF----KEENSEERK 422
                67999*******************8...88888899***********************9999********************9997....888888999 PP

       GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv..lgWkdrpLvsvSaWr 374
                l++ e+++v++  g+     +e +  W er+++aGF + +++e+a + ak+llrk++ +  +++  e+g+ +  l Wk++++ ++S W+
  Tp3g12280 423 LMEGEATKVLMSLGEI----NEGKDIWYERMRKAGFVAEAFGEDAIDGAKSLLRKYDnN--WEIRMEDGETFagLLWKGEAVSFCSLWK 505
                9999********9998....9************************************44..5555444444446**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.229118484IPR005202Transcription factor GRAS
PfamPF035144.6E-77145505IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MSLEETEPPN ETLDNVLGWL EDSMSLTPLP GFNDSDLLHE FEGFQTWEWD QTQDPGYDFL  60
HNYSQDLNAY MGCEATNLEE VTGAPVIVSD PPPVLQQPND QSKKRNRDGL LDDHPMKIPA  120
RSKRRAKKSS EMSCKDGNKN ERWAEQLLNP CALAITARNS SRAQHYLCVL SELASSCGDA  180
NHRLAAFGLC ALKNHISTSS ASSSTTFASA EVKMFQKTLL KFYEVSPWFA LPNNMANSAI  240
LQILAQEPRD KKDLHILDIG VSHGMQWPTL LEALCCRPEG PPPRVRITVV FDLTEDIPFS  300
VGPPSYNYGS QLTGFARSLK INLQVSVIDK FQRIDTSPHE SLIVCTQFRL YQLKNSINDE  360
RSEALKALRS LKPKGMVLCE NNGECSSSGD FAGGFSRKLE YMWKFLDSTS YGFKEENSEE  420
RKLMEGEATK VLMSLGEINE GKDIWYERMR KAGFVAEAFG EDAIDGAKSL LRKYDNNWEI  480
RMEDGETFAG LLWKGEAVSF CSLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B9e-3313650579473Protein SHORT-ROOT
5b3h_B7e-3313650525419Protein SHORT-ROOT
5b3h_E7e-3313650525419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g12280
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2425470.0JX242547.1 Sinapis alba isolate SaNSP1 nodulation signaling pathway 1-like protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407135.20.0scarecrow-like protein 29
SwissprotQ9LRW30.0SCL29_ARATH; Scarecrow-like protein 29
TrEMBLJ7HA420.0J7HA42_SINAL; Nodulation signaling pathway 1-like protein
STRINGXP_006407135.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107472834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.10.0GRAS family protein