PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g12430
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Trihelix
Protein Properties Length: 448aa    MW: 48412.1 Da    PI: 9.9333
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g12430genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.54.8e-1591178186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W+++ + +Li+a  e+  +l+rg+lk+++W+ev++ +      ++  ++ +qCk++++ ++k+yk++k +  ++  +s+s++++fd+l+
  Tp3g12430  91 CWSERATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVssreDYGKTPKTDIQCKNRIDTVKKKYKQEKVRIVNG--GSRSRWVFFDKLD 178
                7*************************************85444455566778*******************9997..66668******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.6E-2589180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDDEEEIRSH ASPTGSDSPD PSSSPPPGRV TVTVASTGPP SYSLTPPASS SSQHKDPDAL  60
ALALLPIHAS GGVGGSSSNG RPSGGGGRED CWSERATAVL IDAWGERYLE LSRGNLKQKH  120
WKEVAEIVSS REDYGKTPKT DIQCKNRIDT VKKKYKQEKV RIVNGGSRSR WVFFDKLDRL  180
IGSTAKIPTA PPAISGGGSP GGGGGLHKIP MGIPMGSRSN LYHQQAKAAT PPFNNLDRLI  240
GATARVSAAS FGGSGGGGGG AGSVNVPMGI PMSSRSNPFG QQGRTLPQQQ QGMMVKRCSE  300
SKRWRFGKRN ASDSDSESEA AMSDDSCDSL PPPPLSKRLK TEDKRKQEGD GGGNKWRELS  360
RAIMRFGEAY EQTENAKLQQ VVEMEKERMK FLKELELQRM QFFVKTQLEI SQLKQHGRRM  420
GNTSNDHHSC KNNNENNINA IVNNDVGN
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g12430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_188034.10.0sequence-specific DNA binding transcription factor
SwissprotQ9LJG80.0ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1J3IAQ10.0A0A1J3IAQ1_NOCCA; Trihelix transcription factor ASIL2
STRINGAT3G14180.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-178sequence-specific DNA binding transcription factors