PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g12460
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Trihelix
Protein Properties Length: 340aa    MW: 37625.1 Da    PI: 9.8667
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g12460genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix461.4e-1471161187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                +W+++ +  Li+a  e+  +l+rg+lk+++W+ev++ +      ++ +  ++ +qCk++++ ++k++k++k+    ++  +  ++ +f++lea
  Tp3g12460  71 CWSEEATEILIDAWGERFLELKRGNLKQQHWKEVAEIVnsgssnSRSKSPKTDIQCKNRIDTVKKKFKQEKAKIAAGN--DNGQWIFFKKLEA 161
                7****************************************999999999999**********************984..4447******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.7E-2270162No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEEDDETQSR PSPEGSLSPD SPIGLKTTRK FPASPLSPRN GLNLVVSTPT QVVTGGGSHG  60
RRGGGGGRDD CWSEEATEIL IDAWGERFLE LKRGNLKQQH WKEVAEIVNS GSSNSRSKSP  120
KTDIQCKNRI DTVKKKFKQE KAKIAAGNDN GQWIFFKKLE ALIGGAATTT PSKALTVTPL  180
SSRASLYNRK AKSTALLQQK KQQGGVKRSG ESTRWHFRKR IASETESESE PDLSADSADD  240
SLPPPPVKSD KTGDGGRREL GEVAMAIIGF AESYEKAETV KLKQFIELEK ERTKFAKELE  300
LQRMQFFKSQ LEMLRNIQED GESERTIRSH RSFTDNGNVS
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g12460
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641742.11e-104trihelix transcription factor ASIL1
SwissprotQ9SYG25e-87ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBLA0A087H9I81e-116A0A087H9I8_ARAAL; Uncharacterized protein
STRINGA0A087H9I81e-117(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89101637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54060.17e-746B-interacting protein 1-like 1