PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g14650
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 243aa    MW: 26759.6 Da    PI: 4.5796
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g14650genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-1760110155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                + y+GVr ++ +g+Wv+eIr p++   ++r++lg+f ta++Aa+a++ a++ ++g
  Tp3g14650  60 PVYRGVRMRS-WGKWVSEIRQPRK---KTRIWLGTFATADMAARAHDVAALTIKG 110
                68*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-1260110IPR001471AP2/ERF domain
PROSITE profilePS5103222.58961118IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2161119IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-3161119IPR001471AP2/ERF domain
SMARTSM003807.4E-3661124IPR001471AP2/ERF domain
CDDcd000186.13E-3262120No hitNo description
PRINTSPR003672.1E-106273IPR001471AP2/ERF domain
PRINTSPR003672.1E-1084100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MTSSNSSSSS PTSSSSDQSD VTTTTSTHLS ESSPRTSTRK RRRNSSPSSS SSSSSSSKHP  60
VYRGVRMRSW GKWVSEIRQP RKKTRIWLGT FATADMAARA HDVAALTIKG SSAVINFPEL  120
ASFLPRPASS SPQDIQAAAA EAAAMVVDGK MSETEMEMEE APPTSESSYV AAESVEERLE  180
KIVELPNIEE GSYDESVESR ADLVYSEPFD CWVYPPPPVM DFYEEILEFN LLELWSFPHT  240
ELI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1850118372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13842RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00362DAPTransfer from AT3G16280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g14650
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV LIGHT. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406852.11e-126ethylene-responsive transcription factor ERF036
SwissprotQ9LU181e-103ERF36_ARATH; Ethylene-responsive transcription factor ERF036
TrEMBLV4LCY01e-124V4LCY0_EUTSA; Uncharacterized protein
STRINGXP_006406852.11e-125(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150411618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16280.12e-74ERF family protein