PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g14730
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 394aa    MW: 42502.3 Da    PI: 8.1942
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g14730genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.7e-14133177347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
        Tp3g14730 133 PWTEEEHRLFLVGLQKLGKGDWRGISRNYVTTRTPTQVASHAQKY 177
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.369126182IPR017930Myb domain
SuperFamilySSF466896.13E-17128181IPR009057Homeodomain-like
TIGRFAMsTIGR015579.2E-18129180IPR006447Myb domain, plants
SMARTSM007179.6E-11130180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-11132176IPR009057Homeodomain-like
CDDcd001671.82E-9133178No hitNo description
PfamPF002491.1E-11133177IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RGGGTCGGNG VGVGGGGSSS SAVKLFGVRL TDGSIIKKSA  60
SMGNLSALAV AAAAAHHRLS PSSSPLATGN HNESPLSDHV RYSNQHNEGY LSDDPAHGSG  120
SIHRRVERKR GVPWTEEEHR LFLVGLQKLG KGDWRGISRN YVTTRTPTQV ASHAQKYFIR  180
HSCSSRRKRR SSLFDMVTDE MVRDEMVTDS SPTQEDQTLN RSPPSKEHEN ITYLPSLELS  240
LNNTTESEAV IATVPPQEKP EETIEPSIGL SPMLVPGGFI PPCFPVTYTI WLPATSTSLH  300
GTEHSLESET SSQQHQVLKP KPGFAKERVN MDELVGMSQL SIGMATRHET ETSHSPSPLS  360
LKLIGEPSRP SAFHSNGSVN GSELSKGNSA IQAI
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g14730
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406842.10.0transcription factor MYBS3
TrEMBLV4LCW90.0V4LCW9_EUTSA; Uncharacterized protein
STRINGXP_006406842.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93132735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.10.0MYB_related family protein