PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g16120
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WOX
Protein Properties Length: 347aa    MW: 39789.3 Da    PI: 7.252
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g16120genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.44.5e-2272131357
                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                +R+++t++ql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  Tp3g16120  72 SRWNPTPDQLRALEELYQQgTRTPSADHIQQITAQLrrygKIEGKNVFYWFQNHKARERQ 131
                7*****************99**************************************97 PP
2Wus_type_Homeobox114.93.9e-3771133365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+Ptp+Q++ Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
          Tp3g16120  71 SSRWNPTPDQLRALEELYQQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKR 133
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003896.3E-669136IPR001356Homeobox domain
PfamPF000468.3E-2072131IPR001356Homeobox domain
SuperFamilySSF466893.74E-1272137IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-972131IPR009057Homeodomain-like
CDDcd000862.29E-673133No hitNo description
PROSITE profilePS5007110.99777132IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MWMMGYNEGG ADSFNGGRKL RPLIPRLSSC PTAAANNNSD HRFNMVVTAE QNKRELMMLN  60
TEPQHPPVMV SSRWNPTPDQ LRALEELYQQ GTRTPSADHI QQITAQLRRY GKIEGKNVFY  120
WFQNHKARER QKRRRQMENG HDESVFTTTS LVSNHGFDKK DPLGYKIEQT KNWICSVGCD  180
TQPEKPHDHH HQEEPVSISM VATNRNGRHV GDERRSFSGR NAMWQMMQLP PGLYPSSQHQ  240
HHQLILNSTT VSSNLSTSNP TVSAPKDMVT VSPLFPRTRA ATNIETCDDN KDKEQREDCS  300
NGELDHQEQT LELFPLRREE FCSNDGDGGK EKESGIHCFY EFLPLKN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g16120
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135564.10.0PREDICTED: WUSCHEL-related homeobox 1-like isoform X2
RefseqXP_013736499.10.0WUSCHEL-related homeobox 1 isoform X2
SwissprotQ6X7K00.0WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLA0A398A9340.0A0A398A934_BRACM; Uncharacterized protein
STRINGBra001694.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73972741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.10.0WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]