PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g16220
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 820aa    MW: 92423 Da    PI: 5.4331
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g16220genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-15507551146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+ WT+eEd++l  av+++G ++W ++a+ +  gRt+ qc +rw k
        Tp3g16220 507 RKEWTAEEDDQLRAAVELFGEKDWQSVANVLE-GRTGTQCSNRWKK 551
                      789*****************************.***********98 PP
2Myb_DNA-binding42.51.5e-13561605247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g++ +eEd++   av+++G  +W++Ia+ ++ gRt+ qc++rw + 
        Tp3g16220 561 GKFCPEEDKRMTVAVTLFGAQNWHKIAHFVP-GRTPTQCRERWANC 605
                      56779**************************.***********885 PP
3Myb_DNA-binding56.85e-18612656146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+WT+eEd +l +a++++G g+W++Ia+++  +Rt+ qc+ rw +
        Tp3g16220 612 RGKWTKEEDAKLREAITEHGCGRWSKIASHLS-HRTDSQCRRRWMS 656
                      89******************************.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.121352448IPR017877Myb-like domain
SMARTSM007170.075356450IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-9359375IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-9421460IPR009057Homeodomain-like
SuperFamilySSF466891.91E-12430498IPR009057Homeodomain-like
PROSITE profilePS500908.13449501IPR017877Myb-like domain
SMARTSM007172.1E-6453503IPR001005SANT/Myb domain
PfamPF002491.5E-5456499IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-11461507IPR009057Homeodomain-like
SuperFamilySSF466892.73E-20486559IPR009057Homeodomain-like
PROSITE profilePS5129422.073502557IPR017930Myb domain
SMARTSM007171.4E-15506555IPR001005SANT/Myb domain
PfamPF002491.2E-13507551IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-17508558IPR009057Homeodomain-like
CDDcd001671.05E-12509553No hitNo description
PROSITE profilePS5129411.622558606IPR017930Myb domain
SMARTSM007172.9E-9559608IPR001005SANT/Myb domain
PfamPF002492.3E-11561605IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-19561611IPR009057Homeodomain-like
CDDcd001675.25E-9565604No hitNo description
SuperFamilySSF466892.84E-27586661IPR009057Homeodomain-like
PROSITE profilePS5129427.091607662IPR017930Myb domain
SMARTSM007176.8E-15611660IPR001005SANT/Myb domain
PfamPF002494.8E-16612657IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-21612657IPR009057Homeodomain-like
CDDcd001671.25E-14614657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MNRESLYEAD DDDDEDDIGE DLEDLRRACM VSEPNSDEVI AEHDSVGPEG GGGGGIPSNS  60
ENEDDFEMLR SIKNQLASSK DSRGGPPLGL SLPSDSESED DFEMLRSLKS QLALSMDACF  120
PPMSLSDDDD EDDSFETLRA IRRRFSAYAN FDLDGTFMND SSGKKKQVYA SDNEPSSEIL  180
SRSNTCERFP DHGKSVVTVP DSEGVQAGHS VDLHENTAIV PLDQLETCQS SLLPAASSTF  240
PESAQAFVDA IRRNRSCQKF LRRKLTEIES KIVQNEKHQK NVKIVKDFQA SCKRITKQAL  300
SQGKDPRVEL ISTRKSGPHD SSEGNKKTSP LMFGPPENPC VANYRMALEK YPVSVNRRNW  360
SNEENENLAK GLKQQIQETL LSEAIERSSN LEGSTDDIDT INESIKNLEI TPEMIRQFLP  420
KVNWDQLASM YIKDRSAAEC EARWMSSEDP LINHRPWTAE EENNLRLIIK KQSLTDWLDI  480
AVSLGTNRTP FQCLARYQRS LNADILRKEW TAEEDDQLRA AVELFGEKDW QSVANVLEGR  540
TGTQCSNRWK KSLHPTRKKV GKFCPEEDKR MTVAVTLFGA QNWHKIAHFV PGRTPTQCRE  600
RWANCLDPNV SRGKWTKEED AKLREAITEH GCGRWSKIAS HLSHRTDSQC RRRWMSLYPH  660
QVPLLQEATR LRREAIVGNF VDRESERPAL FAGDCLALPE ISVEPEPAIV ALKKKRKRQK  720
KSNADCESQA SCAAPERQPK KRRKGLEGCS GDVCTQENET VCENDENNGG EVTSLEWYNE  780
NQDNVKAKKQ RGRRKSVAET SNSSTVTTNC SQVKVGIKKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-284236569159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-284236569159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1712720KKKRKRQKK
2713720KKRKRQKK
3739743KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g16220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013685972.10.0myb-like protein L
TrEMBLA0A0D2ZRC10.0A0A0D2ZRC1_BRAOL; Uncharacterized protein
STRINGBostr.19424s0860.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1