PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g16630

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

TCP

Protein Properties

Length: 451aa MW: 51836.6 Da PI: 7.5314

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g16630	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126	4e-39	153	320	2	135
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec....e 74 + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i++++++ s +++s+ + Tp3g16630 153 PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIANSlsshfnhggfssgeesqtrpalgSMDTSSDLrelaS 252 5799**********************************************************999999998887777766655553333333322232 PP TCP 75 aesssssasnsssg....................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 + ++ k+k q ++ +l+k+ rakar+ra++rt ekm+++ + Tp3g16630 253 -------------MwtvedrgsnnnttetggnkvDGRSMRGKRKMLQPRTPILKKLSKDARAKARERAKDRTMEKMMKRRS 320 .............02222222223344667778844444445555666666669********************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-40	154	317	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.724	155	213	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.467	297	314	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MNNNKTFSTT STINEDYMLF PYNDNHSSQP LLPFSPSSSI NDILIHSNSN TSNTHLDHHH 60 HQQFLQAPSP FSQFVPDFAL LASFLPQNNG HNDNQTFTTN DHHHHHYPSL LPLNNPIGES 120 QLLEPSETIT THIEDSQRIS TSQDPKMKKV KKPSRTDRHS KIKTAKGTRD RRMRLSLDVA 180 KELFGLQDML GFDKASKTVE WLLTQAKPEI IKIANSLSSH FNHGGFSSGE ESQTRPALGS 240 MDTSSDLREL ASMWTVEDRG SNNNTTETGG NKVDGRSMRG KRKMLQPRTP ILKKLSKDAR 300 AKARERAKDR TMEKMMKRRS QVNVVEDEEA HNHHDKVVKN NKSNVNWTYS FEATPFEDEI 360 EELRKNDHFA VCNEFVVNKK DHISDESYDM INKWNSSFPM LNQHRSQGAA TSVEQHQFTD 420 VHHYLEKPRD FMYNYHKCAD IYPFTVNFSS E

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MNNNKTFSTT STINEDYMLF PYNDNHSSQP LLPFSPSSSI NDILIHSNSN TSNTHLDHHH  60
HQQFLQAPSP FSQFVPDFAL LASFLPQNNG HNDNQTFTTN DHHHHHYPSL LPLNNPIGES  120
QLLEPSETIT THIEDSQRIS TSQDPKMKKV KKPSRTDRHS KIKTAKGTRD RRMRLSLDVA  180
KELFGLQDML GFDKASKTVE WLLTQAKPEI IKIANSLSSH FNHGGFSSGE ESQTRPALGS  240
MDTSSDLREL ASMWTVEDRG SNNNTTETGG NKVDGRSMRG KRKMLQPRTP ILKKLSKDAR  300
AKARERAKDR TMEKMMKRRS QVNVVEDEEA HNHHDKVVKN NKSNVNWTYS FEATPFEDEI  360
EELRKNDHFA VCNEFVVNKK DHISDESYDM INKWNSSFPM LNQHRSQGAA TSVEQHQFTD  420
VHHYLEKPRD FMYNYHKCAD IYPFTVNFSS E

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269\|PubMed:17307924, ECO:0000269\|PubMed:17452340}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g16630

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269\|PubMed:17307924}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018439441.1	0.0	PREDICTED: LOW QUALITY PROTEIN: transcription factor TCP18-like
Swissprot	A1YKT1	0.0	TCP18_ARATH; Transcription factor TCP18
TrEMBL	A0A398ARF0	0.0	A0A398ARF0_BRACM; Uncharacterized protein
STRING	Bo1g117490.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7269	27	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.1	1e-156	TCP family protein

Publications ? help Back to Top
Lewis JM, et al. Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development. Plant Cell Rep., 2008. 27(7): p. 1217-25 [PMID:18392625] Niwa M,Endo M,Araki T Florigen is involved in axillary bud development at multiple stages in Arabidopsis. Plant Signal Behav, 2013. 8(11): p. e27167 [PMID:24305631] González-Grandío E,Cubas P Identification of gene functions associated to active and dormant buds in Arabidopsis. Plant Signal Behav, 2014. 9(2): p. e27994 [PMID:24518068] Stes E, et al. Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana. J. Exp. Bot., 2015. 66(16): p. 5123-34 [PMID:26136271] Yao C,Finlayson SA Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth. Plant Physiol., 2015. 169(1): p. 611-26 [PMID:26149576] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Seale M,Bennett T,Leyser O BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis. Development, 2017. 144(9): p. 1661-1673 [PMID:28289131] Otori K,Tamoi M,Tanabe N,Shigeoka S Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis. Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477 [PMID:28471323] Lantzouni O,Klermund C,Schwechheimer C Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings. Plant J., 2017. 92(5): p. 924-938 [PMID:28977719] Yang Y, et al. The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis. PLoS Genet., 2018. 14(3): p. e1007296 [PMID:29570704]