PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g17370
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 428aa    MW: 46252.5 Da    PI: 10.2137
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g17370genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.51.2e-12350403558
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                +r+rr++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ +  e+ ++ ++
  Tp3g17370 350 RRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKVNQELQRKQAEMMEMQKN 403
                69***************************************8666555555443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.8E-10346411IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.53348399IPR004827Basic-leucine zipper domain
CDDcd147072.28E-24350402No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-12350406No hitNo description
PfamPF001702.5E-10350403IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.34E-9350399No hitNo description
PROSITE patternPS000360353368IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGTHINFNNL GGGGPSGGEG SNQMKPTDTA NPLVRQSSVY SLTFDELQST LGGPGKDFGS  60
MNMDELLKSI WTAEEAQAMT MNSSAPTVVA QPAGGIPGGN LQRQGSLTLP RTISQKTVDE  120
VWKFLMTKDS NNDNMGGSSG GGGESNAPPA RQQTLGEMTL EEFLFRAGVV REDNCTQQMG  180
QVNGNNNGFY GNNGAAGGLG FGFGQPNQNS ISFNGNNDSM ILNQPPGLGL KVGGTMSQQQ  240
QQQQQLQQQQ PRQQLSQQHQ QQRLPQTIFP KQANVAFAAP VGMVNKNYAG AANNSINNNN  300
GLASFGGAGV TVAATSPGTS SAENNSLSPV PYVLNRGRRS NTGLEKVIER RQRRMIKNRE  360
SAARSRARKQ AYTLELEAEI EKLKKVNQEL QRKQAEMMEM QKNELKESSK QPWGSKRQCL  420
RRTLTGPW
Functional Description ? help Back to Top
Source Description
UniProtFunctions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16463099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g17370
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9719740.0JQ971974.1 Eutrema salsugineum abscisic acid responsive elements-binding factor 4 (ABF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641143.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X2
SwissprotQ9M7Q20.0AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBLD7L9X60.0D7L9X6_ARALL; Uncharacterized protein
STRINGBostr.19424s0732.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73427129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19290.11e-169ABRE binding factor 4
Publications ? help Back to Top
  1. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  2. Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF
    Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions.
    Plant Mol. Biol., 2018. 97(1-2): p. 149-163
    [PMID:29680877]
  3. Muñiz García MN,Cortelezzi JI,Fumagalli M,Capiati DA
    Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance.
    Plant Mol. Biol., 2018. 98(1-2): p. 137-152
    [PMID:30143991]