PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g17570
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HB-PHD
Protein Properties Length: 707aa    MW: 78331.1 Da    PI: 4.4971
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g17570genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.83.3e-126036441253
                HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
   Homeobox  12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                +++L + F++n+yp+ +++e LAk+l++t +qV +WF N R 
  Tp3g17570 603 TQRLFKSFQENQYPDNTTKESLAKELQMTANQVNNWFRNTRF 644
                78999**********************************995 PP
2PHD40.46.9e-14256311151
                SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
        PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                +C+ Cg+     +++++lCdg C++ fH++C++++l++e++p +  +wlC+ C++k
  Tp3g17570 256 FCAKCGSkdLSVDNDIILCDGfCDRGFHQYCVEPPLRKEDIPPDdeSWLCPGCDCK 311
                699***955445********88*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.66E-14242311IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.9E-13250310IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.163254311IPR019787Zinc finger, PHD-finger
CDDcd155048.29E-27256308No hitNo description
SMARTSM002491.6E-9256309IPR001965Zinc finger, PHD-type
PfamPF006282.5E-11256311IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590257308IPR019786Zinc finger, PHD-type, conserved site
SMARTSM003898.3E-8598653IPR001356Homeobox domain
SuperFamilySSF466895.56E-12600646IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-12603651IPR009057Homeodomain-like
PfamPF000469.0E-10603644IPR001356Homeobox domain
CDDcd000862.40E-11603643No hitNo description
PROSITE profilePS5007112.487606649IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MHSAGRRRTR SSGSGLEQTN GECGGDVTPA ADKVSEQSNA SAPLKAPEAE SHMKNLGETP  60
DDANGNGHLH NGTMENGKGI SNGEEQKSAP ETRKKSSVTK FSGPHRELVL GLPCRGQLET  120
RWSRMSATSS KKLGGGGERN VLFSSHKKAH RSEEVAAPSS VDAISTPVDG PKKRKKNMKK  180
GKVREDDDLI DAYSLEGWKG SSLEKPRPEK ELERATKEIL RRKVKIRELI QHLDTLCAEG  240
SLPVDSDGEI CSEDIFCAKC GSKDLSVDND IILCDGFCDR GFHQYCVEPP LRKEDIPPDD  300
ESWLCPGCDC KDYSFDLLND SLGTKLSVGD SWEQQQWLVG IKKLDCDLPS DDSDDEEYDP  360
DGLNDNEDDE GGSDDNDESE NEDGSSDESN FTSASDEIIG SFKEAKDIMD LPSDDSEDDD  420
YDPDAPIRDE DKMQESSNSY YSSDCEDLET SFKDEETNEQ HELMPRRKPG RKKSKLPDVS  480
ITESDAGIDD DLVDAPGRRK VERLDYKKLY DEEYENVPTS SSDDEDWDKI AGKEDSESAD  540
EGDTVPLKQS SKAEDHTSTK KPRQEPKREN KDTLKAPEEA PGENGCSGEK SSSAAYKQKN  600
LRTQRLFKSF QENQYPDNTT KESLAKELQM TANQVNNWFR NTRFSTSKTM VSKQDVKKLR  660
TGKECEGETS AAVAGSSEQI METESVAENK SGASGSTNTR SRKRRRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171175KKRKK
2496503GRRKVERL
3701705RKRRR
4701706RKRRRS
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g17570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013641428.10.0homeobox protein HAT3.1-like
RefseqXP_013641435.10.0homeobox protein HAT3.1-like
SwissprotQ049960.0HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLA0A3P5ZFP40.0A0A3P5ZFP4_BRACM; Uncharacterized protein
STRINGBra038213.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.10.0Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]