PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g18770
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GATA
Protein Properties Length: 209aa    MW: 23270.9 Da    PI: 6.6578
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g18770genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.8e-18165201135
       GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C+  nC++ +Tp+WRrgp g+ktLCnaCG+++rk+++
  Tp3g18770 165 CTnmNCNAVNTPMWRRGPLGPKTLCNACGIKFRKEEE 201
                55559*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.23E-11161204No hitNo description
SMARTSM004017.3E-9161209IPR000679Zinc finger, GATA-type
PfamPF003207.0E-16165201IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.9E-13168203IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.49E-12169198No hitNo description
PROSITE profilePS5011411.807169203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MENELDLTLR LSLPSPTVET HLSLNTPITN QGTNVDGVRR DNNDGGEIHG RRHNLMIDDE  60
LVDDDEGTRN DVDVNTRVYN IIFNHFAGIG QTLNFDPYPM TPSSPAPAPE TPTGSDYVLI  120
DVPARRAHRN NYLTIENALD ADANQKQRRG CGGCCGGRIN GPRKCTNMNC NAVNTPMWRR  180
GPLGPKTLCN ACGIKFRKEE ERRSKRNVE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g18770
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632513.11e-101PREDICTED: GATA transcription factor 29
SwissprotQ9LT455e-60GAT29_ARATH; GATA transcription factor 29
TrEMBLA0A0D3AC081e-88A0A0D3AC08_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GCU31e-88A0A3P6GCU3_BRAOL; Uncharacterized protein
STRINGBo1g108670.12e-89(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.14e-53GATA transcription factor 29
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]