PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g20480

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

CPP

Protein Properties

Length: 613aa MW: 67449 Da PI: 7.6291

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g20480	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.3	2e-15	317	354	2	39
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+CnCkkskClk+YCeCfaag++C e C+C C+Nk Tp3g20480 317 SCKRCNCKKSKCLKLYCECFAAGVYCIEACSCVVCFNK 354 689**********************************8 PP
2	TCR	52.7	8.4e-17	402	440	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN Tp3g20480 402 RHKRGCNCKKSNCLKKYCECFQGGVGCSINCRCEGCKNA 440 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	5.2E-16	316	357	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.747	317	442	IPR005172	CRC domain
Pfam	PF03638	2.1E-11	319	354	IPR005172	CRC domain
SMART	SM01114	2.1E-17	402	443	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	3.6E-12	404	440	IPR005172	CRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048444	Biological Process	floral organ morphogenesis
GO:0051302	Biological Process	regulation of cell division
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence Send to blast
MDTPPKTVTE MGTPISKFKV ENSPVYNYIN SLSPIKPVES IPMSQTFGFF TSLPSVFNSS 60 HAASHKTSPF RTHSNSSDPS NVESSSIGEE MVKEALLETE PPQILKNDSP ATLTPRAINE 120 GSREDGKTDL QKMNDASVKP KSDTPDWSTL ISDSEILIYG SPPDPEAFTC FLQRPSDSKT 180 RLSGCSKPTL EPVPNSNELE SSDALSILHR GVRKRCLEFE MPGNNKQTTG ESSSRYVVPS 240 IGLHLNAIAM SSKDKSFSNE YSFSRNINVG LQRSTTPFFP SHETWEAAGQ DIVEGPKSLA 300 LVEMNQSKSE LVEGESSCKR CNCKKSKCLK LYCECFAAGV YCIEACSCVV CFNKPIYEDT 360 VLATRKQIES RNPLAFAPKV IRKADFITEA GDDASKTPAS ARHKRGCNCK KSNCLKKYCE 420 CFQGGVGCSI NCRCEGCKNA FGRKDAYVLA IMESKQEEDH ETYEKRTAQI QQNSDLSKEV 480 EQTPSSDQPS TPLPPYRHLV VHQPFLSKNR LPPTQFFLGA GSSSFRKPDG DLTQSTNEKK 540 RLETVTEDET EIMPEILSNS PITTIKAISP NSKRVSPPHL GSSESGSVLG KRSNGRKLIL 600 RSIPAFPSLN PNQ

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence Send to blast

MDTPPKTVTE MGTPISKFKV ENSPVYNYIN SLSPIKPVES IPMSQTFGFF TSLPSVFNSS  60
HAASHKTSPF RTHSNSSDPS NVESSSIGEE MVKEALLETE PPQILKNDSP ATLTPRAINE  120
GSREDGKTDL QKMNDASVKP KSDTPDWSTL ISDSEILIYG SPPDPEAFTC FLQRPSDSKT  180
RLSGCSKPTL EPVPNSNELE SSDALSILHR GVRKRCLEFE MPGNNKQTTG ESSSRYVVPS  240
IGLHLNAIAM SSKDKSFSNE YSFSRNINVG LQRSTTPFFP SHETWEAAGQ DIVEGPKSLA  300
LVEMNQSKSE LVEGESSCKR CNCKKSKCLK LYCECFAAGV YCIEACSCVV CFNKPIYEDT  360
VLATRKQIES RNPLAFAPKV IRKADFITEA GDDASKTPAS ARHKRGCNCK KSNCLKKYCE  420
CFQGGVGCSI NCRCEGCKNA FGRKDAYVLA IMESKQEEDH ETYEKRTAQI QQNSDLSKEV  480
EQTPSSDQPS TPLPPYRHLV VHQPFLSKNR LPPTQFFLGA GSSSFRKPDG DLTQSTNEKK  540
RLETVTEDET EIMPEILSNS PITTIKAISP NSKRVSPPHL GSSESGSVLG KRSNGRKLIL  600
RSIPAFPSLN PNQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-15	321	439	14	120	Protein lin-54 homolog
5fd3_B	1e-15	321	439	14	120	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269\|PubMed:10769244, ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:9043081, ECO:0000269\|PubMed:9725857}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00370	DAP	Transfer from AT3G22780	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g20480

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024015205.1	0.0	protein tesmin/TSO1-like CXC 3
Swissprot	Q9LUI3	0.0	TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBL	A0A3P6G598	0.0	A0A3P6G598_BRAOL; Uncharacterized protein
STRING	Bostr.19424s0382.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Lu T,Dou Y,Zhang C Fuzzy clustering of CPP family in plants with evolution and interaction analyses. BMC Bioinformatics, 2013. 14 Suppl 13: p. S10 [PMID:24268301] Xie W, et al. Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach. Front Plant Sci, 2015. 6: p. 829 [PMID:26528302] Wang W,Sijacic P,Xu P,Lian H,Liu Z Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054 [PMID:29535223]