PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g23070

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

G2-like

Protein Properties

Length: 289aa MW: 32654.4 Da PI: 6.0571

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g23070	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.7	3.5e-30	90	144	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrW+++LH +Fv ave+LGG++kAtPk++ e+m+v+g++l+hvkSHLQk+Rl Tp3g23070 90 KARLRWSSDLHGCFVTAVEKLGGPDKATPKAVQEIMEVEGIALHHVKSHLQKFRL 144 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-26	87	144	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.76E-13	89	144	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-25	90	145	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MSSQELKKKE KGKEIVTFED NPSTSLHHVD HFDEMEEVSM YFSEKGITAL LEANKEKQDK 60 KDNAEKVDVE EKKSPSSKIT PCIFYTSDDK ARLRWSSDLH GCFVTAVEKL GGPDKATPKA 120 VQEIMEVEGI ALHHVKSHLQ KFRLGKCNIR DESDPYNKRF INPYVSNEPQ SMPSSSTITK 180 LNDDRLNPAF LPTAVPPTVD SLHQGTLNST FPFSTTPQSV QTYVPRPTYT YPAYNTLEAV 240 KARLSELQNS STSQTRATTS HETNLPSSVP RDEEDPVDKF WSKSFTLEY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	90	146	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	90	146	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	90	146	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	90	146	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	90	146	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	90	146	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	90	146	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	90	146	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g23070

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020886266.1	1e-107	transcription repressor KAN1
TrEMBL	V4LBC5	1e-134	V4LBC5_EUTSA; Uncharacterized protein
STRING	XP_006418607.1	1e-135	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13406	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G06020.1	1e-110	G2-like family protein