PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g23490
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 422aa    MW: 47639 Da    PI: 6.4323
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g23490genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS442.82.5e-135624224374
       GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
                +L +cA+avs++++ +a++++ +l+ ++s +g+p+qRl ay++e+L arla ++s++yk+l+ +e +   s e l+++ +++ev+P++kf+++ aN aI 
  Tp3g23490  62 VLAACAKAVSENNHLMARWCMGELRSMVSITGEPIQRLGAYMLEGLVARLAATGSSIYKSLQFREPE---SYEFLSYVYFLHEVCPFFKFGYMSANGAIA 158
                799***************************************************************9...9***************************** PP

       GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEala 203
                ea++geer+HiiDf+i+qG QW+aL+qa+a+Rp+g+p++RiTg+g+       +l  +++rL+k+A+++ vpf+fn+ v+++  ++e+e+L+v++gEal 
  Tp3g23490 159 EAMKGEERIHIIDFQIGQGSQWVALIQAFAARPGGAPNIRITGIGD-----GSNLVIVRKRLEKLAKKFLVPFKFNA-VSRSSCKVEVESLDVRKGEALG 252
                **********************************************.....889***********************.79999***************** PP

       GRAS 204 VnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
                Vn++++lh+l+desvs+e+ rd++L++vkslsPkvv++veqe+++n+++Fl rf+e+l+yy+a+f+s+++ lpr+++eri+vE+++l+r+ivn++acega
  Tp3g23490 253 VNFAYMLHELPDESVSTENLRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFFETLSYYTAMFESIDVLLPRNHKERINVEQHCLARDIVNIIACEGA 352
                **************************************************************************************************** PP

       GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                er+erhe l+kW++r+++aGF+p+pls+ + +++++ll+ ++ +gy +ee++g+l+lgW+dr+Lvs SaW+
  Tp3g23490 353 ERIERHELLGKWKSRFSMAGFEPYPLSSIVSATIRALLKDYS-NGYGIEERDGALYLGWMDRTLVSSSAWK 422
                *****************************************9.9**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.98933403IPR005202Transcription factor GRAS
PfamPF035148.5E-13362422IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MENVKGLRHD LREVEKKLLQ PLPEIAESIN DAVCHELSMW PEDADDLLLL VEAISRGDLK  60
WVLAACAKAV SENNHLMARW CMGELRSMVS ITGEPIQRLG AYMLEGLVAR LAATGSSIYK  120
SLQFREPESY EFLSYVYFLH EVCPFFKFGY MSANGAIAEA MKGEERIHII DFQIGQGSQW  180
VALIQAFAAR PGGAPNIRIT GIGDGSNLVI VRKRLEKLAK KFLVPFKFNA VSRSSCKVEV  240
ESLDVRKGEA LGVNFAYMLH ELPDESVSTE NLRDRLLRMV KSLSPKVVTL VEQECNTNTS  300
PFLPRFFETL SYYTAMFESI DVLLPRNHKE RINVEQHCLA RDIVNIIACE GAERIERHEL  360
LGKWKSRFSM AGFEPYPLSS IVSATIRALL KDYSNGYGIE ERDGALYLGW MDRTLVSSSA  420
WK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-60634228375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g23490
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069550.0AC006955.6 Arabidopsis thaliana chromosome 2 clone F28I8 map RNS1, complete sequence.
GenBankAC0072110.0AC007211.6 Arabidopsis thaliana chromosome 2 BAC F1O13 genomic sequence, complete sequence.
GenBankAF2107320.0AF210732.1 Arabidopsis thaliana scarecrow-like 21 (SCL21) mRNA, complete cds.
GenBankAK1752100.0AK175210.1 Arabidopsis thaliana mRNA for putative SCARECROW gene regulator, complete cds, clone: RAFL21-63-H23.
GenBankBT0264550.0BT026455.1 Arabidopsis thaliana At2g04890 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418535.10.0scarecrow-like protein 21
SwissprotQ9S7H50.0SCL21_ARATH; Scarecrow-like protein 21
TrEMBLV4MX300.0V4MX30_EUTSA; Uncharacterized protein
STRINGXP_006418535.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.10.0SCARECROW-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]