PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g26870
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 237aa    MW: 27023.3 Da    PI: 8.5976
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g26870genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.81.1e-074064123
               EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
               ++C+   Cgk F+ +s+L++H+ +H
  Tp3g26870 40 HVCKeiGCGKAFKYPSQLQKHQDSH 64
               79********************998 PP
2zf-C2H221.75.4e-07130155123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                +kC+   C+ +Fs  snL++H++  H
  Tp3g26870 130 FKCEveGCSSTFSKASNLQKHMKAvH 155
                89********************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-73864IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.54E-53866No hitNo description
SMARTSM003550.00184064IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0534069IPR007087Zinc finger, C2H2
PfamPF000962.1E-54064IPR007087Zinc finger, C2H2
PROSITE patternPS0002804264IPR007087Zinc finger, C2H2
SMARTSM003550.787297IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-47495IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807497IPR007087Zinc finger, C2H2
SMARTSM0035517100121IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.34E-9111165No hitNo description
SMARTSM003551.0E-4130155IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.152130160IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-8130155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280132155IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.8E-5156182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.1161187IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280163187IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAMSVGMLRY FIVMTIVART IPITVILTRT ILVIAIVKQH VCKEIGCGKA FKYPSQLQKH  60
QDSHVKLESV ETFCSEPGCM KYFTNEECLK AHIRSCHQRI SCEICGSRHL KKNIKRHLRT  120
HGEDSSPGEF KCEVEGCSST FSKASNLQKH MKAVHEDIRP FVCGFPGCGM RFAYKHVRNN  180
HENSGCHIYT CGDFVEADED FTSRPRGGVK RKQVTAEMLI RKRVMPPQFD PEEHETC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gli_A2e-12421814154PROTEIN (FIVE-FINGER GLI)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g26870
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304780.0AJ630478.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g72050D.
GenBankAY0542250.0AY054225.1 Arabidopsis thaliana At1g72050/F28P5_6 mRNA, complete cds.
GenBankAY0660420.0AY066042.1 Arabidopsis thaliana At1g72050/F28P5_6 mRNA, complete cds.
GenBankAY1866100.0AY186610.1 Arabidopsis thaliana transcription factor IIIA (TFIIIA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301795.11e-137transcription factor IIIA
SwissprotQ84MZ41e-135TF3A_ARATH; Transcription factor IIIA
TrEMBLR0IDC61e-136R0IDC6_9BRAS; Uncharacterized protein
STRINGXP_006301795.11e-136(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-137transcription factor IIIA