PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g26980

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

NF-YB

Protein Properties

Length: 215aa MW: 24499 Da PI: 6.4207

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g26980	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	179.3	3.4e-56	36	131	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdrflPianv+rimkkvlP+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv+plkvyl kyre+egek Tp3g26980 36 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLGKYRETEGEK 131 89*******************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.5E-55	31	161	IPR009072	Histone-fold
SuperFamily	SSF47113	5.12E-42	38	163	IPR009072	Histone-fold
Pfam	PF00808	4.1E-28	41	105	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.1E-18	69	87	No hit	No description
PROSITE pattern	PS00685	0	72	88	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.1E-18	88	106	No hit	No description
PRINTS	PR00615	1.1E-18	107	125	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MTEESPEEDH ESPGAAETNP GSPSSKNKST NNNSNKEQDR FLPIANVGRI MKKVLPGNGK 60 ISKDAKETVQ ECVSEFISFV TGEASDKCQR EKRKTINGDD IIWAITTLGF EDYVAPLKVY 120 LGKYRETEGE KVNSPKQRQQ QQQPQQQLQQ NHHFQFQEQD HNNISYTTYI SHHHPSPFLP 180 ADHQPFPNLP FSPKSLQKQF PQQHDNIDSI GQWSV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-45	36	126	2	92	Transcription factor HapC (Eurofung)
4g92_B	1e-45	36	126	2	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g26980

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC787669	0.0	KC787669.1 Brassica napus transcription factor subunit NF-YB7B (NF-YB7B) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018456010.1	1e-129	PREDICTED: nuclear transcription factor Y subunit B-7-like
Swissprot	Q9SIT9	1e-120	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	A0A3P5ZP76	1e-125	A0A3P5ZP76_BRACM; Uncharacterized protein
TrEMBL	M4D9I3	1e-125	M4D9I3_BRARP; Uncharacterized protein
STRING	Bra013143.1-P	1e-126	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	1e-104	nuclear factor Y, subunit B7

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]