PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g27050
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 177aa    MW: 20988.7 Da    PI: 9.1376
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g27050genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding383.7e-122974147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W   Ede l +++ q+G+++W+ I++++  gR+ k+ ++rw++ 
        Tp3g27050 29 RGHWNLMEDENLRKLILQYGPKNWNFISEYFE-GRSTKSYRLRWYNQ 74
                     899*****************************.************96 PP
2Myb_DNA-binding38.23.2e-1287126647
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +eE++ l++a++   ++ W++Ia+ ++ +Rt++ +k+++++ 
        Tp3g27050  87 EEEEDMLLKAHAIQRNR-WDSIAKNFP-RRTDNAVKNHFYTI 126
                      567789***********.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.3122479IPR017930Myb domain
SMARTSM007171.6E-92877IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-2129127IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-193082IPR009057Homeodomain-like
CDDcd001671.77E-93273No hitNo description
PfamPF139211.9E-123291No hitNo description
SMARTSM007177.2E-1080129IPR001005SANT/Myb domain
PROSITE profilePS5129411.61780131IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-1783129IPR009057Homeodomain-like
CDDcd001672.69E-691127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MVRDRESLVV STEVSEGSNG CENNKSCQRG HWNLMEDENL RKLILQYGPK NWNFISEYFE  60
GRSTKSYRLR WYNQLDPKLK EKPFTEEEEE DMLLKAHAIQ RNRWDSIAKN FPRRTDNAVK  120
NHFYTIMARR KCEGSVTNTS YNLPSLNNLY FGFGRYCIKY TQNVLAPCSS WIFFGLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-24291304104MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-242413053158MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-242413053158MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-25291304104C-Myb DNA-Binding Domain
1msf_C9e-25291304104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g27050
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885886.11e-66transcription factor MYB117
SwissprotQ6R0C42e-40MYB52_ARATH; Transcription factor MYB52
TrEMBLD7L0453e-65D7L045_ARALL; Uncharacterized protein
STRINGscaffold_303564.15e-66(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.18e-54myb domain protein 69
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]