PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g27600

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GeBP

Protein Properties

Length: 525aa MW: 59115.2 Da PI: 9.7662

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g27600	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	57.7	3.3e-18	367	432	29	98
DUF573 29 spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 sp d +f e vk+sisf++++sql+eKir+LK+Kfk++++k + ++fs+++d +fe+sk iWgs Tp3g27600 367 SPGRDRIGFQESVKSSISFEFTTSQLIEKIRSLKRKFKRNESK----EVVTFSRPDDLTCFEISKEIWGS 432 67789999********************************9....999****************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	7.9E-15	367	431	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MKPKKPILAC TREEPPRIYR FCGRTIGNGG GSSVKRDRDA RAEMVKRISE GDEANHTAKS 60 FVAEKKKNLK CPFKILMAKK QTKPMQQPPS EAAQVETSEE HEELVKTPTE IVAVSLAGKQ 120 AFGSDNETEK ITSVVKSKKN KKRSKKEAHT SAAVALPKKK SKTMEEPPSE EEEQVPMKEE 180 ESGGEHRDPI ETSTEIVAVS VVGKQASGLD TETEKIAYVV KSKKKKKKKR SKKSKTMEQP 240 PSEEEEQVSM EEEESGGEHK EPVETPTEIV AVSVAGKQAS GSENKTEKIA SVAKSKQNKK 300 RSKKEAHTSA AVALSKKKSK SMEEPPRKEE EQVSMVEGEQ KETKLHHLRQ SFQPPESKIP 360 VQIRLKSPGR DRIGFQESVK SSISFEFTTS QLIEKIRSLK RKFKRNESKE VVTFSRPDDL 420 TCFEISKEIW GSKVDEEKEK EDEEEDKEEE GEEEGWFENS FLVGKVSSFG LGEKTVKKGW 480 SLVPKERKKK IEHKLKLFEK ESNKFVMVKI DIVHDGISAI VKYTS

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MKPKKPILAC TREEPPRIYR FCGRTIGNGG GSSVKRDRDA RAEMVKRISE GDEANHTAKS  60
FVAEKKKNLK CPFKILMAKK QTKPMQQPPS EAAQVETSEE HEELVKTPTE IVAVSLAGKQ  120
AFGSDNETEK ITSVVKSKKN KKRSKKEAHT SAAVALPKKK SKTMEEPPSE EEEQVPMKEE  180
ESGGEHRDPI ETSTEIVAVS VVGKQASGLD TETEKIAYVV KSKKKKKKKR SKKSKTMEQP  240
PSEEEEQVSM EEEESGGEHK EPVETPTEIV AVSVAGKQAS GSENKTEKIA SVAKSKQNKK  300
RSKKEAHTSA AVALSKKKSK SMEEPPRKEE EQVSMVEGEQ KETKLHHLRQ SFQPPESKIP  360
VQIRLKSPGR DRIGFQESVK SSISFEFTTS QLIEKIRSLK RKFKRNESKE VVTFSRPDDL  420
TCFEISKEIW GSKVDEEKEK EDEEEDKEEE GEEEGWFENS FLVGKVSSFG LGEKTVKKGW  480
SLVPKERKKK IEHKLKLFEK ESNKFVMVKI DIVHDGISAI VKYTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	229	KKKKKKR
2	223	232	KKKKKKRSKK
3	224	232	KKKKKRSKK
4	225	232	KKKKRSKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g27600

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00610.1	5e-16	DNA-binding storekeeper protein-related transcriptional regulator