PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g27630

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GeBP

Protein Properties

Length: 396aa MW: 44791.6 Da PI: 9.4142

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g27630	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	57.3	4.5e-18	237	303	28	98
DUF573 28 kspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 k+p++d +f e vk+ isf++ +sql+eKir+LK+Kfk++++k + ++fs++hd +fe+sk iWgs Tp3g27630 237 KHPFEDRIGFQESVKSLISFEFPTSQLIEKIRSLKRKFKRNESK----EVVTFSRPHDLICFEISKEIWGS 303 48999************************************9....999****************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.4E-14	233	302	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MRQNDSKLTS EEHEELVKTP TEIVAVSVAG KQASGLDNET EKITYVVKSK KNKKRSKKEA 60 HTSAAVALPK KKSKTMEKPS SEEEEQVRME EEESGGEHKE PVETSTEIVA VSVVGKQASG 120 SDTETEKIAS VSKSKKNKKR SKKRKTMEEP PSEQEEQIVA VSVAGKQASG SENETEKIAS 180 VAKSKQNKKR WKKEAHTSAA VALSKKKSKS MEESPSKEED YTEEEEESAK QRRKLMKHPF 240 EDRIGFQESV KSLISFEFPT SQLIEKIRSL KRKFKRNESK EVVTFSRPHD LICFEISKEI 300 WGSKVDKEKE KEDKEEDKEE EGEGDGSFEN SFLVGKVASF DLGEKTVKKG WSLVPKERKK 360 KIEQKLKLFE KEANKFVMVK IDIVHDVVSA IAEYTS

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MRQNDSKLTS EEHEELVKTP TEIVAVSVAG KQASGLDNET EKITYVVKSK KNKKRSKKEA  60
HTSAAVALPK KKSKTMEKPS SEEEEQVRME EEESGGEHKE PVETSTEIVA VSVVGKQASG  120
SDTETEKIAS VSKSKKNKKR SKKRKTMEEP PSEQEEQIVA VSVAGKQASG SENETEKIAS  180
VAKSKQNKKR WKKEAHTSAA VALSKKKSKS MEESPSKEED YTEEEEESAK QRRKLMKHPF  240
EDRIGFQESV KSLISFEFPT SQLIEKIRSL KRKFKRNESK EVVTFSRPHD LICFEISKEI  300
WGSKVDKEKE KEDKEEDKEE EGEGDGSFEN SFLVGKVASF DLGEKTVKKG WSLVPKERKK  360
KIEQKLKLFE KEANKFVMVK IDIVHDVVSA IAEYTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	142	KKNKKRSKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g27630

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66420.1	4e-15	DNA-binding storekeeper protein-related transcriptional regulator