PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g27680
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 222aa    MW: 24960.8 Da    PI: 10.1244
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g27680genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-1369116355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r h ++ErrRR+++ ++f  L +++P +     kK +Ka++L  +++Y+k+Lq
  Tp3g27680  69 RDHIIAERRRREKLSQRFIALSTIVPGL-----KKTDKASVLGGTIRYLKHLQ 116
                5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.66966115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-1670127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1070116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-1670131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.32E-1271120No hitNo description
SMARTSM003533.8E-1372121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEPQLYNHQS PVVTTLEAEA AKQLRPRSYT TNQSSSGFGE YGVMGNLQPK KESTLLAQRN  60
VSRGVSQARD HIIAERRRRE KLSQRFIALS TIVPGLKKTD KASVLGGTIR YLKHLQDRVR  120
FLEEQANHRT IESVVYLNKS MLSTADTEHD CVPLPEIEAR LSGKNVLIRV HCEKTKGVVE  180
ITMAEIEKLK LTVINSSVIT FGSNSLHLTI ISQVSFTFLI FI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17479ERRRRE
27580RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g27680
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627871.11e-133PREDICTED: transcription factor bHLH25-like
SwissprotQ9T0722e-45BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A3P6BEX61e-133A0A3P6BEX6_BRAOL; Uncharacterized protein
STRINGBo3g088300.11e-133(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-47bHLH family protein