PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g30500
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 260aa    MW: 28861.3 Da    PI: 7.5468
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g30500genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047130151223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                +C+dC+k+F ++  L  H  tH
  Tp3g30500 130 ECEDCKKVFGSHQALCGHKETH 151
                7*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0265166IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.097129156IPR007087Zinc finger, C2H2
SMARTSM003550.2129151IPR015880Zinc finger, C2H2-like
PfamPF139125.8E-4130151IPR007087Zinc finger, C2H2
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
SuperFamilySSF576671.69E-5193219No hitNo description
PfamPF139121.6E-12194218IPR007087Zinc finger, C2H2
SMARTSM003550.074194216IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141194221IPR007087Zinc finger, C2H2
PROSITE patternPS000280196216IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MTNTSDSDPN FNIPFESSNV ILPSYNQNPR KKRTKSSNNV TRSSPSKPKP FWSLKALYGH  60
MRCHPERQWR GIDPPPNHQR TVTPPPNNQR TVTPPPSSLV PVTLEEDHDI ASSLLMLANG  120
STTGLEGRLE CEDCKKVFGS HQALCGHKET HNQDEGCLAI TSVTEDPLPP PPHQEIVDQD  180
HKNKRLKLVS GINHQCNICL RVFSSGQALG GHMRCHWERD QKEKNQDSTV IDLNVPASTN  240
LPGSSSNTLS ECSLDLRLGI
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00621PBMTransfer from AT2G17180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g30500
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409340.11e-113zinc finger protein ZAT2
SwissprotQ9SIJ06e-92ZAT2_ARATH; Zinc finger protein ZAT2
TrEMBLV4ME421e-112V4ME42_EUTSA; Uncharacterized protein
STRINGXP_006409340.11e-113(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.11e-92C2H2-like zinc finger protein