PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g32000
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 515aa    MW: 56956.3 Da    PI: 5.26
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g32000genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3204.9e-981515142374
       GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                +e L++++++v+s++l+laq +L+rl+++ +sp+g+p+qR+a+yf+eAL + l++     +   + + ts+++ ++++ a k fs +sPi+ fsh+taNq
  Tp3g32000 151 IEDLIRVVDCVDSEELQLAQVILSRLNQRlRSPAGRPLQRAAFYFKEALGSLLFG-----STRNQNRLTSWTEIVQRIRAIKEFSGISPIPLFSHFTANQ 245
                678*************************99*************************.....5556778888888*************************** PP

       GRAS 101 aIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                aIl++++++     Hi+Df+i+ G+Q+++L++++a+++  +   lR+T+v+++e  s+ e++ ++e+La+fA+ l+++f++++++++++e+l+++++r+ 
  Tp3g32000 246 AILDSLQQSssPFAHIVDFEIGFGGQYASLMREIAEKSsVNGGFLRVTAVVPEE--SAVETRLVKENLAQFAADLKIRFQIEFVLMRTFEMLSFKAIRFV 343
                ********966678***********************965667*********66..99****************************************** PP

       GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                +gE ++V l+  ++r l       + ++ +++ ++++sPkvvv+v++e      +s+sF ++f++ le+y+++++sl+a +p+ +  ++ +E+++l+++i
  Tp3g32000 344 EGERTVVLLSPVIFRRL-------NGISGFVNDLRRVSPKVVVFVDSEgwNGIsGSGSFQREFVSGLEFYTMVLESLDAAAPNGDLVKKIIEAFVLRPKI 436
                ****************9.......33567*******************642335999******************************************* PP

       GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +v ++ ++r++  e   +Wre++ +aG++p+pls+++  qa++l++k +++g++v +++g+lvl+W++rpL+++SaWr
  Tp3g32000 437 AAAVEAAASKRQAGGE--LTWREAFCAAGMRPIPLSQFVDFQAECLVEKAQVRGFHVAKRQGELVLCWHERPLIATSAWR 514
                *********9877776..89***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.955124494IPR005202Transcription factor GRAS
PfamPF035141.7E-95151514IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MRVSASSDTT TSNSGGRNLV GYNESTSVLD LRRSPSPAAA EEKPVVTAAS GDNQFPLDDH  60
VMRSMDWDSI MRELELDDDS APNLKSNFPP SAISSHFAVD PQLPGFPDQL HPAEFQSSSD  120
VYPSAHGYGF DNNNNNNNNN EGSVNGGFDF IEDLIRVVDC VDSEELQLAQ VILSRLNQRL  180
RSPAGRPLQR AAFYFKEALG SLLFGSTRNQ NRLTSWTEIV QRIRAIKEFS GISPIPLFSH  240
FTANQAILDS LQQSSSPFAH IVDFEIGFGG QYASLMREIA EKSSVNGGFL RVTAVVPEES  300
AVETRLVKEN LAQFAADLKI RFQIEFVLMR TFEMLSFKAI RFVEGERTVV LLSPVIFRRL  360
NGISGFVNDL RRVSPKVVVF VDSEGWNGIS GSGSFQREFV SGLEFYTMVL ESLDAAAPNG  420
DLVKKIIEAF VLRPKIAAAV EAAASKRQAG GELTWREAFC AAGMRPIPLS QFVDFQAECL  480
VEKAQVRGFH VAKRQGELVL CWHERPLIAT SAWRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2515651325378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g32000
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409136.10.0scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1J3DDU30.0A0A1J3DDU3_NOCCA; Scarecrow-like protein 15 (Fragment)
STRINGXP_006409136.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]