PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g00410
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 529aa    MW: 57109.2 Da    PI: 8.6523
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g00410genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.52.2e-11379437563
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                kr +r   NR++A rs +RK  +++eLe kv++L++e ++L  +l +l+  +  l++++
  Tp4g00410 379 KRVKRILANRVSAARSKERKTRYMAELEHKVQTLQTEATTLSAQLTHLQRDSMGLTNQN 437
                899*********************************************99888777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.8E-19375439IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.749377440IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.2E-12379433No hitNo description
PfamPF001701.3E-9379436IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.62E-11379435No hitNo description
CDDcd147039.43E-21380429No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010628Biological Processpositive regulation of gene expression
GO:0010629Biological Processnegative regulation of gene expression
GO:0090567Biological Processreproductive shoot system development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MVGTDSSMMQ RANSSSGTSS SSIPKQQVPV THLNPALIRS QQFRQPFSGG NNGGGAGNRV  60
GAPPPIPPVS PYSQIPATLQ PKHSRSMSQP SSFFSFDSLP PLNPSPPITV SLEERNGSGF  120
SPSLPPSPFT MCHSTSRIVG GDGENLPPRK SHRRSNSDVT FGFGSVMAQN QKSPALIPSR  180
SLERSISDGE ASDWSNLVKE EPGEGFFRGR KSESEAMDDV FTAYMNLDNI DVLNSFGGED  240
GKTGNETVEE MESSRGSGTR KTNGGSSSDS EGESSASGNV KGVVSSSGVK RRATGDIAPT  300
SRHYRSVSMD SCFMGKLNFG DESSLKLPPS SAKVSPTNSG EGNSSAYSVE FGNSEFSAAE  360
MKKIAADEKL AEIVMADPKR VKRILANRVS AARSKERKTR YMAELEHKVQ TLQTEATTLS  420
AQLTHLQRDS MGLTNQNSEL KFRLQAMEQQ AQLRDALSEK LTEEVQRLKL VIGEPSRRQG  480
GSSSESNMSK TSLNPEMFQQ LSISQLQQHQ QMQHSNENST MKAKHASNE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00037PBMTransfer from AT2G21230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g00410
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404562.10.0probable transcription factor PosF21
TrEMBLV4L6Q30.0V4L6Q3_EUTSA; Uncharacterized protein
STRINGBostr.5022s0114.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156251417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21230.10.0bZIP family protein