PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g00580

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

SRS

Protein Properties

Length: 156aa MW: 17685.2 Da PI: 9.6282

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g00580	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	94.1	2.8e-29	6	65	5	64
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaa 64 + +C+dCGnqakk+C+++RCRtCCks++f+C+th+kstWvpa++r++++q +++ + ++ Tp4g00580 6 GRRCEDCGNQAKKECVYMRCRTCCKSKAFHCQTHIKSTWVPAYRRSHKHQSQTQHQPLST 65 569*******************************************99776665544433 PP
2	DUF702	83.7	4.6e-26	65	123	96	154
DUF702 96 skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++ ++++P+e+ss a frcv+vss+ddg+e++aYqt+v+igGhvf+GiL+dqGl++ Tp4g00580 65 TTNAKRVRHFPAELSSLADFRCVKVSSLDDGKEQYAYQTTVNIGGHVFRGILHDQGLDK 123 334456778***********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.2E-25	6	63	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.5E-28	9	50	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	9.1E-23	66	122	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	2.0E-29	73	121	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MMMIMGRRCE DCGNQAKKEC VYMRCRTCCK SKAFHCQTHI KSTWVPAYRR SHKHQSQTQH 60 QPLSTTNAKR VRHFPAELSS LADFRCVKVS SLDDGKEQYA YQTTVNIGGH VFRGILHDQG 120 LDKLLHTSSS SCPLTIASSF TNFMSGTQFP SHQKAL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g00580

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006841	6e-55	AC006841.7 Arabidopsis thaliana chromosome 2 clone F3K23 map mi148, complete sequence.
GenBank	CP002685	6e-55	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018438354.1	8e-83	PREDICTED: protein SHI RELATED SEQUENCE 3
Swissprot	Q9SJT8	8e-83	SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBL	D7LBD1	1e-82	D7LBD1_ARALL; Uncharacterized protein
STRING	Bostr.5022s0092.1.p	3e-85	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9188	26	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	3e-85	SHI-related sequence3