PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g02620

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

LBD

Protein Properties

Length: 313aa MW: 35016.5 Da PI: 4.7295

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g02620	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.6	1.8e-42	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC+++Cv+apyfp +qp+kf vhk+FGasnv+k+l++lp+ reda++sl+yeAear+rdP+yG+vg+i+ lqq l++ +++l+++kee Tp4g02620 5 PCAACKLLRRKCTQECVFAPYFPPTQPQKFISVHKVFGASNVTKILNDLPPPSREDAVNSLYYEAEARIRDPIYGCVGLISFLQQCLKKIQQDLVAAKEE 104 7**********************************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	2.6E-100	2	311	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	26.918	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-41	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MASTPCAACK LLRRKCTQEC VFAPYFPPTQ PQKFISVHKV FGASNVTKIL NDLPPPSRED 60 AVNSLYYEAE ARIRDPIYGC VGLISFLQQC LKKIQQDLVA AKEELAGYIG PDAVISQPPY 120 LPPMANNPPS NFMMSMEGMP HGMIPQGEQL IIREPNLSQH QNQHQHQHQQ QDEQMHMMAA 180 DAQRMAAMIM DRGDQQGMFN GYGIDNNGSV TATGYNQMDM NDQTAGVSLS GPSLALGSYG 240 DAYQMDQNAE HHINHDQLQT QLMLQPPLQG QEQSEAQFLM QPIGQENIHE EEEVEELGLP 300 VKWRKSENKE ASY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-47	2	108	8	114	LOB family transfactor Ramosa2.1
5ly0_B	6e-47	2	108	8	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g02620

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006404852.1	1e-177	LOB domain-containing protein 10
Swissprot	O64836	1e-168	LBD10_ARATH; LOB domain-containing protein 10
TrEMBL	V4L7G1	1e-176	V4L7G1_EUTSA; Uncharacterized protein
STRING	XP_006404852.1	1e-177	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14908	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23660.2	1e-138	LOB domain-containing protein 10

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]