PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g03640
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 1473aa    MW: 166775 Da    PI: 8.9495
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g03640genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.4e-17138227598
                -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ++ +   +++rl+lp +f++e+g+ k++  ++ l   +  +W  +l    ++gr++ ++GWk+FvkangLk+g++ +++l++ +++++v++++ 
  Tp4g03640 138 TLAPVDVRHCRLRLPMQFTRENGIHKPG--KIYLLGNDCLKWLANLL-LENRGRMTVGDGWKSFVKANGLKTGESYTLELNW-EGTTPVLSLCP 227
                556667789*************999766..8***************6.55556778899*********************99.88889999986 PP
2B360.62.7e-19301394198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                f++ ++++d+l++grl+lp +f+ e+++++++  ++tl  ++g +W   l    ++gr+ l+kGWk+F+kangLk+gD++ ++ ++ ++ ++v++++r
  Tp4g03640 301 FLTLTITPDSLRHGRLRLPLEFMMENSMNTPG--DITLLGKDGAKWLASLL-LERRGRMCLGKGWKDFAKANGLKTGDSIRLESIW-EDSTPVLRLLR 394
                778899********************999666..7***************6.55556778***********************999.66668888776 PP
3B3505.5e-16661750498
                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                +ltp+dv + + l lp +f++++g+++++  ++tl  +sg +W  +l     +g++ l++GW++F++ang+ +g++++++++ r++++ v+k+++
  Tp4g03640 661 TLTPEDV-RDCKLHLPSQFMRTNGIIEPG--KITLLGRSGMKWFAYL--LSEDGTVALGNGWNGFCEANGVMVGESFILEFIPREDTNHVLKFYS 750
                4555555.5677************99766..8***************..99999***************************98888877777665 PP
4B340.64.6e-138599331696
                EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3  16 lvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 ++p  f++++ +g  +e++t +l++  s   Wevk+  + + +   lt+GWk+F+ a++L+ gD++vF+ ++++ f  +v++
  Tp4g03640 859 TTIPVAFLSKYiEGR-NEQTTAKLRSdASKIIWEVKI--EDG-Q--KLTDGWKQFALAHDLRIGDILVFRQEKDMAF--HVTF 933
                58*********8444.4567999998678899*****..333.2..4***********************7777777..7765 PP
5B374.31.5e-239811071496
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3    4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96  
                   +++++l+ + l++p +f++++g+ ++++ +++l++e+grsW+v l+ +k+ g +++++GW++F++angLk+gD ++Fkl++  +++lv+++
  Tp4g03640  981 SNVTASTLRYDALYFPMSFTRANGLGTRCG-EIVLMNEKGRSWTVDLKRKKSCGVMYIRRGWRSFCSANGLKAGDLFTFKLIQ-GGRTLVLRL 1071
                 56788999999************9999887.****************87777777**************************98.566667665 PP
6B364.22.1e-2011271217597
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3    5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97  
                  +++ +l+ + + lp++f++e+g +++++  ++l++++grsW++ l+ +k+ g++++t+ W++F++ang+k+g f +Fkl++ +++++v+++ 
  Tp4g03640 1127 YVSPATLRYDTMNLPRRFVRENGVDPKCG-AIVLMNRKGRSWTLALRQKKSCGTMYITRRWRSFCHANGIKAGGFYTFKLIQ-RGRTPVLRLS 1217
                 56677889999***********9998887.****************99999999***************************9.5666777765 PP
7B374.31.4e-2312731365498
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3    4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98  
                 + +++++l ++ l+lp+kf +e+ ++++++ +++l++e+grsW++ l+ +++ g++++t+GW++F+k ngL++g f+ Fkl++ ++++lv+++ +
  Tp4g03640 1273 AYISPSTLCRDTLCLPRKFSRENALEERCG-EIVLMNEKGRSWTLHLKRKRSCGTMYITQGWRSFCKTNGLRAGSFFSFKLIN-RGGTLVLRLSS 1365
                 5678899999*************9999887.****************98999999**************************98.56667777665 PP
8B353.73.8e-1713721467299
                 EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3    2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99  
                 ++ ++++ +lk+ +l+lp +f++ hg+++e  +++tl d++g +W+  l+ +++++r+ l +GW++F +an +k g++++ kl+++ e+++v+k+++k
  Tp4g03640 1372 VTLTLKPFNLKKYILYLPAPFTRMHGINEE--TKMTLLDKNGVKWSTDLRSENTGDRIRLVGGWQGFFEANCVKLGESIIVKLIWEGEKSCVLKFCSK 1467
                 55566777889999************9954..58****************************************************99999*999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-20128234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-20130232IPR015300DNA-binding pseudobarrel domain
PfamPF023624.3E-17134227IPR003340B3 DNA binding domain
SMARTSM010191.8E-26134229IPR003340B3 DNA binding domain
PROSITE profilePS5086313.437134228IPR003340B3 DNA binding domain
CDDcd100172.37E-13138227No hitNo description
Gene3DG3DSA:2.40.330.101.2E-19291393IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-21297392IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-18301394IPR003340B3 DNA binding domain
PROSITE profilePS5086315.058301396IPR003340B3 DNA binding domain
CDDcd100173.81E-18301394No hitNo description
SMARTSM010197.5E-30301396IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-18653750IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-20653749IPR015300DNA-binding pseudobarrel domain
CDDcd100171.85E-13656740No hitNo description
PROSITE profilePS5086313.126657752IPR003340B3 DNA binding domain
SMARTSM010199.5E-21657752IPR003340B3 DNA binding domain
PfamPF023621.4E-14661750IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-6819854IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-5820855IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.448844937IPR003340B3 DNA binding domain
SMARTSM010194.3E-13847937IPR003340B3 DNA binding domain
PfamPF023627.2E-9860930IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-19860950IPR015300DNA-binding pseudobarrel domain
CDDcd100171.77E-10860934No hitNo description
SuperFamilySSF1019362.55E-14860944IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-239721073IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-229771077IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-239781071No hitNo description
PROSITE profilePS5086316.5259781075IPR003340B3 DNA binding domain
SMARTSM010191.0E-319791075IPR003340B3 DNA binding domain
PfamPF023621.6E-239801072IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-1911171216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-1811211218IPR015300DNA-binding pseudobarrel domain
CDDcd100173.96E-1811211216No hitNo description
PROSITE profilePS5086314.14211231219IPR003340B3 DNA binding domain
SMARTSM010191.8E-2611231220IPR003340B3 DNA binding domain
PfamPF023624.9E-1911261218IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-2012631362IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-1912681362IPR015300DNA-binding pseudobarrel domain
CDDcd100174.25E-2112701363No hitNo description
SMARTSM010193.0E-2712701367IPR003340B3 DNA binding domain
PROSITE profilePS5086316.53912701367IPR003340B3 DNA binding domain
PfamPF023624.4E-2112731365IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-1713641467IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-1913661465IPR015300DNA-binding pseudobarrel domain
PfamPF023623.7E-1513711467IPR003340B3 DNA binding domain
CDDcd100173.11E-1613711465No hitNo description
PROSITE profilePS5086312.94313711468IPR003340B3 DNA binding domain
SMARTSM010191.6E-2213711468IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1473 aa     Download sequence    Send to blast
MMFQVSDLGT CYCKIRDVVA PSGKNGQDNI GNISMKKPPH PRQEAGFSSN HGDDQDNIEL  60
PREKRVKKNN PESEAYSSLD HSCSEARVTA SSLQTDALFL PQELTSSNGL KRKCRKKYSP  120
KRILSSYSSR EKRFLTFTLA PVDVRHCRLR LPMQFTRENG IHKPGKIYLL GNDCLKWLAN  180
LLLENRGRMT VGDGWKSFVK ANGLKTGESY TLELNWEGTT PVLSLCPTGY SIDSRAEAEC  240
SEASEKESLP IKPTSGNENI KYASSKDENV DENSKVESSS WGREKNHLRW RDSSSANQNR  300
FLTLTITPDS LRHGRLRLPL EFMMENSMNT PGDITLLGKD GAKWLASLLL ERRGRMCLGK  360
GWKDFAKANG LKTGDSIRLE SIWEDSTPVL RLLRIESSSD RVQHGEYSKA TEKESVVTEP  420
SRNKTRRAER NREESRNHPL RRRDSSLAIQ SQFTTPSLSP ETEIVHRVAR DIRISEIVLF  480
RDEGDMMFQV SDLGPSFCEI RDVLAPSSIS DQENIGSISI KMHPQLRKEV GLYHGGDQYN  540
IELPRKKKVK KNNPGNKADS SSDHSCFVAH VTTSNLHTDA LSIWEDATPV LSLLRIESSN  600
GRGQNEFSKQ SHSTGPSSGN NTKNAENNKE ESSSGELEKR EHLPTRRDSY SAMQNRIVIL  660
TLTPEDVRDC KLHLPSQFMR TNGIIEPGKI TLLGRSGMKW FAYLLSEDGT VALGNGWNGF  720
CEANGVMVGE SFILEFIPRE DTNHVLKFYS NVRPNTTEAY STELSNEEDM ERERNEDESL  780
MEIQKKKFNP ERRAVSYSSY SPCHKRFVTF TFSNNFSVVL SRNGTVALEN GWDEFCDANG  840
VKLGESFTLE FINEQDTITT IPVAFLSKYI EGRNEQTTAK LRSDASKIIW EVKIEDGQKL  900
TDGWKQFALA HDLRIGDILV FRQEKDMAFH VTFLGPSCCE IQYESCSEDE QLGKIPKKKK  960
VKKNPRKDTE SASLDPSCFV SNVTASTLRY DALYFPMSFT RANGLGTRCG EIVLMNEKGR  1020
SWTVDLKRKK SCGVMYIRRG WRSFCSANGL KAGDLFTFKL IQGGRTLVLR LSSTGSEEDN  1080
EVKSLSTEPE SGEESNLEEF QRRKKVKKNP KGETESDSLD PSCFVAYVSP ATLRYDTMNL  1140
PRRFVRENGV DPKCGAIVLM NRKGRSWTLA LRQKKSCGTM YITRRWRSFC HANGIKAGGF  1200
YTFKLIQRGR TPVLRLSSAE LETEEESSEG DEVESLSTEP ESDEESNLKK IQRKKNPKRE  1260
AESSSLDRSC FVAYISPSTL CRDTLCLPRK FSRENALEER CGEIVLMNEK GRSWTLHLKR  1320
KRSCGTMYIT QGWRSFCKTN GLRAGSFFSF KLINRGGTLV LRLSSQSQNQ FVTLTLKPFN  1380
LKKYILYLPA PFTRMHGINE ETKMTLLDKN GVKWSTDLRS ENTGDRIRLV GGWQGFFEAN  1440
CVKLGESIIV KLIWEGEKSC VLKFCSKVKQ DTK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111001107QRRKKVKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g03640
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069545e-76AC006954.8 Arabidopsis thaliana chromosome 2 clone F25P17 map mi238, complete sequence.
GenBankCP0026855e-76CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150791619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.10.0B3 family protein