PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g03680
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 608aa    MW: 69533.3 Da    PI: 8.4503
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g03680genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3437.9e-1421951094
               HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3 10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                ++++ l +p  f+ +h +k+++++t +l++  s  +W+vk+  ++++    +++GW++F+ a++L++gD+vv++++g+    lv+
  Tp4g03680 21 GFTNH-LDIPMAFFLKHLEKSNKGRTAKLRSdASEMTWKVKI--DGRR----FSNGWEDFAVAHDLRVGDIVVLRHEGE----LVF 95
               56666.9**********666778889999987888*******..9998....99*********************7663....333 PP
2B356.26.2e-18151238496
                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                v++++++l+++  +lpk fa  +g+   ++++++l++e+g+s ++ l+ + +sgr+++++GW++F+ ang k gD+++Fkl++ +e+++v+++
  Tp4g03680 151 VTVTASNLRRD--YLPKAFAVLNGLM--KKFEIVLMNEEGESRKIDLRNEAYSGRFYMSRGWRSFCVANGKKPGDMFTFKLVE-NEETPVIQL 238
                56677888888..*******999988..5679***************99********************************98.555578776 PP
3B368.96.8e-22275366397
                EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 + +++++l+++ ++lpk+fa ++g++  e++++ l++e+g+sW++ l+++ +sgr+++++GW++F+ ang k gD++ Fkl++ +++++v+k+f
  Tp4g03680 275 VAIVTASNLRRDTVYLPKTFAVSNGLI--EKFQIELMNEKGESWTIDLKHEAYSGRFLMRRGWRSFCVANGKKPGDMFNFKLIR-NDETPVLKLF 366
                5678999********************..5678**************************************************9.6667899887 PP
4B348.22e-15510601699
                ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ++   ++ +r+ lp +f++ +g++k++  ++++ d  g +W+  + + +kk+g++ l+kG k F++ ng+k g+++v++l++ +++ +v+++++k
  Tp4g03680 510 VTLTLTSANRFNLPLEFTKGNGINKAG--KIKMIDMYGTKWSRSILMdKKKKGAMSLGKGCKAFCEVNGVKMGESFVLELVW-EDTVPVLRFCSK 601
                566677889*************99887..7***************995555555****************************.788899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-198105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-199109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.96911103IPR003340B3 DNA binding domain
CDDcd100171.69E-141298No hitNo description
SMARTSM010197.2E-2214103IPR003340B3 DNA binding domain
PfamPF023625.6E-92494IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-18142236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-18145239IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.562146242IPR003340B3 DNA binding domain
CDDcd100174.73E-16148240No hitNo description
SMARTSM010199.5E-27148242IPR003340B3 DNA binding domain
PfamPF023621.1E-16149238IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-20270364IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-20270366IPR015300DNA-binding pseudobarrel domain
CDDcd100172.06E-17273367No hitNo description
PROSITE profilePS5086314.889273369IPR003340B3 DNA binding domain
SMARTSM010191.3E-28274369IPR003340B3 DNA binding domain
PfamPF023623.4E-20275366IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-15504601IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-15504600IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.657505601IPR003340B3 DNA binding domain
CDDcd100172.04E-10509600No hitNo description
SMARTSM010199.3E-20509602IPR003340B3 DNA binding domain
PfamPF023623.1E-13510601IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MANQPLYSPI NPHFFQPLLP GFTNHLDIPM AFFLKHLEKS NKGRTAKLRS DASEMTWKVK  60
IDGRRFSNGW EDFAVAHDLR VGDIVVLRHE GELVFYVTAL GPSCCEIQYG EDSQEEDKME  120
TLCDTTEKVS RKKKSPEIDT DSSTDQSCFI VTVTASNLRR DYLPKAFAVL NGLMKKFEIV  180
LMNEEGESRK IDLRNEAYSG RFYMSRGWRS FCVANGKKPG DMFTFKLVEN EETPVIQLLP  240
LNSEDLLKIA DAKKVPKKKR QEIEEDFLRD RSCFVAIVTA SNLRRDTVYL PKTFAVSNGL  300
IEKFQIELMN EKGESWTIDL KHEAYSGRFL MRRGWRSFCV ANGKKPGDMF NFKLIRNDET  360
PVLKLFPLRF AKPEPRNDTR QGLEDTEKEF LGAQTNRNGI REGLVGTEKE FLDVQTNRND  420
TGQGLEGTEK EFLGVQTNHN DTRQSLEGIE KEFLGAQTNR NDTRQGSYFK VRDRDYLPTN  480
DAIRKGKCSE VNETSIINEE NITTSQNRFV TLTLTSANRF NLPLEFTKGN GINKAGKIKM  540
IDMYGTKWSR SILMDKKKKG AMSLGKGCKA FCEVNGVKMG ESFVLELVWE DTVPVLRFCS  600
KVENRMFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g03680
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880610.10.0B3 domain-containing protein REM10 isoform X3
SwissprotP0DH850.0REM10_ARATH; B3 domain-containing protein REM10
TrEMBLD7LIC10.0D7LIC1_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh1_pg.C_scaffold_40003920.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144901522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]