PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g05630
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 217aa    MW: 24064.7 Da    PI: 10.7006
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g05630genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.52.2e-152573355
        AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               y+G r ++ +g+Wv+eIr+p   gk+ r++lg+f tae+Aa+a++ a+++++g
  Tp4g05630 25 YQGARMRS-WGKWVSEIREP---GKKSRIWLGSFPTAEMAARAHDVAALSIKG 73
               77778777.**********8...557***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.7E-292482IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-192481IPR016177DNA-binding domain
PROSITE profilePS5103222.012481IPR001471AP2/ERF domain
SMARTSM003801.3E-332487IPR001471AP2/ERF domain
PRINTSPR003675.8E-92536IPR001471AP2/ERF domain
PfamPF008473.1E-92573IPR001471AP2/ERF domain
CDDcd000187.82E-292583No hitNo description
PRINTSPR003675.8E-94763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVDSYAADTE CSSIKKRKET STVVYQGARM RSWGKWVSEI REPGKKSRIW LGSFPTAEMA  60
ARAHDVAALS IKGSSAILNF PELSDSLPRP FSLSPRDIQA AATKAAFMKF KTAPFHPRDE  120
TTPQTRSEIN ETSENIEARR NCGVADSGER VKEKFHVVRL VGGVGMDASM VKCNRRRGFS  180
TVGPTFPRKL LVGLLVKNFL GKKIRFSSPI ISYTTYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-152581360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-1525821573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g05630
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought. {ECO:0000269|PubMed:16307362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634969.11e-66PREDICTED: ethylene-responsive transcription factor ERF042
SwissprotQ52QU17e-57ERF42_ARATH; Ethylene-responsive transcription factor ERF042
TrEMBLA0A0D3C2463e-65A0A0D3C246_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C4793e-65A0A3P6C479_BRAOL; Uncharacterized protein
STRINGBo4g158810.16e-66(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25820.18e-54ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]