PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g08390
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 429aa    MW: 48464.5 Da    PI: 4.8921
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g08390genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.91e-172269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Edell+ +v ++G g+W+++ ++ g+ R++k+c++rw ++l
        Tp4g08390 22 KGPWTLAEDELLIAYVDKHGDGNWNAVQKHSGLSRCGKSCRLRWVNHL 69
                     79*******************************************996 PP
2Myb_DNA-binding45.32.1e-1475118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+ E+++ +++++ +G++ W++ a++++ gRt++++k++w++
        Tp4g08390  75 KGSFTEKEEQRVIELHASMGNK-WARMAAELP-GRTDNEIKNFWNT 118
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5421769IPR017930Myb domain
SMARTSM007175.0E-152171IPR001005SANT/Myb domain
SuperFamilySSF466891.41E-2821116IPR009057Homeodomain-like
PfamPF002494.6E-162269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-232376IPR009057Homeodomain-like
CDDcd001678.27E-122469No hitNo description
PROSITE profilePS5129424.47670124IPR017930Myb domain
SMARTSM007171.3E-1474122IPR001005SANT/Myb domain
PfamPF002491.4E-1375118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2477122IPR009057Homeodomain-like
CDDcd001673.97E-1077120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MRKVRHDSGS GEDSALEKTF QKGPWTLAED ELLIAYVDKH GDGNWNAVQK HSGLSRCGKS  60
CRLRWVNHLR PDLKKGSFTE KEEQRVIELH ASMGNKWARM AAELPGRTDN EIKNFWNTRL  120
KRLQRLGLPI YPDEVQEQAM NAAAQSGQNT DSLNGHHSQE SLELDCLEIP EVEFKHLQLN  180
NCTSLYHSML RNFPKGNFMR QRPCLYQPNT YSVIGSPYMS PNRKRFRESE TPFPYTGGYA  240
TNEQSAQLWN NPFVESTSEQ FNVLPDSHFL GNATYSSSSE ALIHEAEKLE LPSFQCFDPQ  300
EEPGDWETQL SNPMPALESD NTLVQSPLTD QTPPNFPSSF YDGLLESVVY GSSGERRETN  360
TDPDSPLLQS SLLGHIELTP ATADTTGHNS NFETDLGQFG PISSNESRTS FDGGDWIRYL  420
LGEDRAYTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29221227106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00279DAPTransfer from AT2G26960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g08390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408602.20.0transcription factor MYB104
SwissprotQ9SM271e-124MY104_ARATH; Transcription factor MYB104
TrEMBLA0A078HJC00.0A0A078HJC0_BRANA; BnaC03g26620D protein
TrEMBLA0A0D3B7F20.0A0A0D3B7F2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AYS00.0A0A3P6AYS0_BRAOL; Uncharacterized protein
STRINGBo3g041750.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91982138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.11e-179myb domain protein 81
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]