PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g09290

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

YABBY

Protein Properties

Length: 165aa MW: 18611.2 Da PI: 9.8819

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g09290	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	196.4	1.2e-60	5	154	3	170
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102 +++++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ + ++++ + ++ s+s+ +++ s Tp4g09290 5 TTTTTEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNF-----------------QATNYAMPEYGSSSRGHTKIP-S 86 67899***************************************99988877766553.................233333334444444433333.4 PP YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + + ++++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Tp4g09290 87 RISARTITEQRVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 154 5556667766779***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.6E-69	8	154	IPR006780	YABBY protein
SuperFamily	SSF47095	3.27E-8	98	148	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.0E-4	101	148	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MSNSTTTTTE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAALQSLS 60 RPNFQATNYA MPEYGSSSRG HTKIPSRISA RTITEQRVVN RPPEKRQRVP SAYNQFIKEE 120 IQRIKANNPD ISHREAFSTA AKNWAHFPHI HFGLMLENNK QAKRA

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g09290

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353291	0.0	AK353291.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-G08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_850080.1	1e-111	plant-specific transcription factor YABBY family protein
Refseq	NP_850081.1	1e-111	plant-specific transcription factor YABBY family protein
Refseq	XP_006295133.1	1e-111	axial regulator YABBY 5
Swissprot	Q8GW46	1e-112	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1J3EWH2	1e-111	A0A1J3EWH2_NOCCA; Axial regulator YABBY 5
STRING	Cagra.11302s0003.1.p	1e-111	(Capsella grandiflora)
STRING	AT2G26580.1	1e-111	(Arabidopsis thaliana)
STRING	XP_006295133.1	1e-111	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-115	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]