PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g10260
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NF-YB
Protein Properties Length: 233aa    MW: 25628.2 Da    PI: 4.1004
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g10260genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB41.53.2e-1310102794
      NF-YB   7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                +lP+a v r++k  l +     +  i k+a     e +  fi ++++ a+d c+  +r+t+++dd++ a+ ++ f +++eplk+ l+ +++ +
  Tp4g10260  10 ELPLAIVRRVVKDKLSEcspdyDVSIHKEALLAFSESARIFIHYLSATANDICKDSRRQTMKADDVFKAIEEMDFAEFLEPLKASLEDFKKKN 102
                69**********999652222356899***********************************************************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.5E-241099IPR009072Histone-fold
PfamPF008083.6E-81079IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.1E-1812101IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MESEKVVVDE LPLAIVRRVV KDKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSATAND  60
ICKDSRRQTM KADDVFKAIE EMDFAEFLEP LKASLEDFKK KNAGKKAGGG GAASKPGSGG  120
GAASKSRETK KRKQEGPSTQ KGVRKSKIDE GDKKSDQNDE EDENDNTEEN VNDEDDNSKD  180
KGNDEENGNE ENSMEENGNE SGNEENSMEE NGSESGEDDE NEGENESGEE EDE
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g10260
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0040831e-122BT004083.1 Arabidopsis thaliana clone RAFL15-10-G12 (R20802) putative CCAAT-binding transcription factor subunit (At2g27470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640708.12e-92DNA polymerase epsilon subunit 3
TrEMBLA0A1J3D4Q61e-85A0A1J3D4Q6_NOCCA; DNA polymerase epsilon subunit 3 (Fragment)
TrEMBLA0A1J3IA232e-85A0A1J3IA23_NOCCA; DNA polymerase epsilon subunit 3 (Fragment)
STRINGCagra.1201s0002.1.p3e-92(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120072430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-71nuclear factor Y, subunit B11