PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g13790
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family LBD
Protein Properties Length: 180aa    MW: 20372.9 Da    PI: 6.1357
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g13790genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.59.4e-3871071100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C +Ck+lrrkC+++Cv+apyf+ e+ +++fa++hk+FGasn +kl+++lp+++r da++++ yeA+ r++dP++G+v+ i++lqqq+ +l+a+++ l+e
  Tp4g13790   7 PCGGCKFLRRKCVEGCVFAPYFCYEEgSSNFAAIHKVFGASNFSKLISHLPDHDRCDAVRTISYEAQSRLHDPIHGCVSQIFSLQQQVISLQAQVVFLRE 106
                7***********************9979******************************************************************999887 PP

     DUF260 100 e 100
                e
  Tp4g13790 107 E 107
                6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.4046108IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-357104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPDHD  60
RCDAVRTISY EAQSRLHDPI HGCVSQIFSL QQQVISLQAQ VVFLREEASR KFPQEDCTEQ  120
RKVLSQDMPQ DLHSWFHQVV SDSNLNQMSD VASTSINRNE SFCSSNESLY YQEVMFPWSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3631017104LOB family transfactor Ramosa2.1
5ly0_B3e-3631017104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g13790
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738501e-150AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438632.11e-121PREDICTED: LOB domain-containing protein 14-like
SwissprotQ9SJW51e-105LBD14_ARATH; LOB domain-containing protein 14
TrEMBLA0A078FFC41e-119A0A078FFC4_BRANA; BnaA05g11430D protein
TrEMBLA0A291LR541e-119A0A291LR54_BRARR; Transcription factor LBD14
STRINGXP_006410263.11e-119(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31310.11e-107LOB domain-containing protein 14
Publications ? help Back to Top
  1. Jeon E, et al.
    LBD14/ASL17 Positively Regulates Lateral Root Formation and is Involved in ABA Response for Root Architecture in Arabidopsis.
    Plant Cell Physiol., 2017. 58(12): p. 2190-2201
    [PMID:29040694]