PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g13910
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 191aa    MW: 22043.7 Da    PI: 10.498
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g13910genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.12.1e-10761591580
                -EE--HHH.HTT.................---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EE CS
         B3  15 rlvlpkkfaeeh.................ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfv 80 
                rl +p k +++                  ++ k e+  ++l d+  r++evkl+ +k +g   yv ++GW++ vkan+ k+gD+ 
  Tp4g13910  76 RLLIPSKQLQSLdflteeesrilyeqsklKIRK-EGLSVVLVDPGLRTYEVKLRRWKVGGNlnYVVAGGWNKVVKANKFKAGDVT 159
                566666666665666555555555555533333.6679***************9999998899********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037541.4E-3439149IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.109.5E-1554188IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-1459169IPR015300DNA-binding pseudobarrel domain
CDDcd100176.21E-1159158No hitNo description
PROSITE profilePS508639.89762179IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVKPDDHTIW KLDMLAKSSK TVFENKEKIG RTVESSSIQP EWLVKVMMKI KENVYDLKPI  60
IVRTLWQTDL NIMQSRLLIP SKQLQSLDFL TEEESRILYE QSKLKIRKEG LSVVLVDPGL  120
RTYEVKLRRW KVGGNLNYVV AGGWNKVVKA NKFKAGDVTR IWSFRYGRGK LCLALSPVEK  180
DSQGESSSRR S
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g13910
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482435.11e-65PREDICTED: B3 domain-containing protein At2g31420-like
TrEMBLA0A0D3C3G74e-62A0A0D3C3G7_BRAOL; Uncharacterized protein
STRINGBo4g176390.17e-63(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2731015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.13e-19B3 family protein