PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g14640

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

FAR1

Protein Properties

Length: 813aa MW: 92774.2 Da PI: 7.167

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g14640	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.2	2.7e-23	58	142	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +++++s++skr+g++++ + Csk g+++e++++ + r+ ++tgCka l++k++ d++w+++++++eHnH+++ Tp4g14640 58 FYREYARSVGFGITIKASRRSKRSGKFIDVKIACSKFGTKRESSTA----INARSCSKTGCKAGLHMKRKADERWVIYNFVKEHNHDIS 142 9**************************************99877....999*******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.9E-21	58	143	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-25	225	318	IPR018289	MULE transposase domain
Pfam	PF04434	3.9E-6	505	539	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.027	505	541	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-6	516	543	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 813 aa Download sequence Send to blast
MDVEDVAMDL LTRSGGNADE CCEASTSGIA ISGLEQFATV GEPRNGMEFE SKEAAYYFYR 60 EYARSVGFGI TIKASRRSKR SGKFIDVKIA CSKFGTKRES STAINARSCS KTGCKAGLHM 120 KRKADERWVI YNFVKEHNHD ISPDDFYVGV RGKNKPAGAL AYQKKGLQLA LEEEDLKLML 180 EHFMDMQDKQ PGFFYAMDFD CEKRIRNVFW LDVKAKHDYC SFSDVVLFDT FYVRNRYRIP 240 FAPFVGISHH RQYVLLGCAL IGEESDSTYS WLFRTWLKAV GGQAPGVMIT DQDKLLSDVV 300 VEVFPSARHF FCLWNVMSKI PEILNPFVSQ DDGFMECFRN CVHGSWTDEQ FETSWSEMIG 360 KFELKENEWV HSLFRDRKKW VPHYFHGICL AGMSGPERSR SIASHFDKYM NSEATFKDFF 420 ELYMKFLQYR CDVEAKVALE SESKQPTLRS ALAFEKQLSL IYTDAALKKF QAEVLGVVSC 480 QLQKEREDRS TAVFCVEDFE KRQNFFVAVN KELLDMCCSC YLFEYQGFLC KHAILVLQNS 540 NVSCIPSQYI LKRWSKNGNK RKEKHEKGAT IHNRMARFDD LSRRFVKLGE VASLSDEAYK 600 TALQFFEETM KNCVSVNSSP KFPSEPDKLL TSGSIGLENE VTLDCASKIS KKKKIQKKRK 660 AYYGPEDATK RSEELRQETE QVSSRAPTFE NCYIPQVDME ATELGSRAAP LGIYYSTQPT 720 IQGFSSVSSV QDGYYGHPAT IQAMGNLHSI HGRMNQYETQ PSIQGAFQGQ MGFRGSAIRA 780 CYDIDETLHD MTMESSQFQG SGPNHPSDQH LSH

Sequence ? help Back to Top

Protein Sequence Length: 813 aa Download sequence Send to blast

MDVEDVAMDL LTRSGGNADE CCEASTSGIA ISGLEQFATV GEPRNGMEFE SKEAAYYFYR  60
EYARSVGFGI TIKASRRSKR SGKFIDVKIA CSKFGTKRES STAINARSCS KTGCKAGLHM  120
KRKADERWVI YNFVKEHNHD ISPDDFYVGV RGKNKPAGAL AYQKKGLQLA LEEEDLKLML  180
EHFMDMQDKQ PGFFYAMDFD CEKRIRNVFW LDVKAKHDYC SFSDVVLFDT FYVRNRYRIP  240
FAPFVGISHH RQYVLLGCAL IGEESDSTYS WLFRTWLKAV GGQAPGVMIT DQDKLLSDVV  300
VEVFPSARHF FCLWNVMSKI PEILNPFVSQ DDGFMECFRN CVHGSWTDEQ FETSWSEMIG  360
KFELKENEWV HSLFRDRKKW VPHYFHGICL AGMSGPERSR SIASHFDKYM NSEATFKDFF  420
ELYMKFLQYR CDVEAKVALE SESKQPTLRS ALAFEKQLSL IYTDAALKKF QAEVLGVVSC  480
QLQKEREDRS TAVFCVEDFE KRQNFFVAVN KELLDMCCSC YLFEYQGFLC KHAILVLQNS  540
NVSCIPSQYI LKRWSKNGNK RKEKHEKGAT IHNRMARFDD LSRRFVKLGE VASLSDEAYK  600
TALQFFEETM KNCVSVNSSP KFPSEPDKLL TSGSIGLENE VTLDCASKIS KKKKIQKKRK  660
AYYGPEDATK RSEELRQETE QVSSRAPTFE NCYIPQVDME ATELGSRAAP LGIYYSTQPT  720
IQGFSSVSSV QDGYYGHPAT IQAMGNLHSI HGRMNQYETQ PSIQGAFQGQ MGFRGSAIRA  780
CYDIDETLHD MTMESSQFQG SGPNHPSDQH LSH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g14640

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024004256.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X1
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A1J3K3V3	0.0	A0A1J3K3V3_NOCCA; Protein FAR1-RELATED SEQUENCE 2
STRING	AT2G32250.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	0.0	FAR1-related sequence 2

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]