PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g15820

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

NAC

Protein Properties

Length: 258aa MW: 29846.7 Da PI: 8.766

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g15820	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.1	4.2e-50	14	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeelvv+yL++kv+g +l++ +vi+e+di++++PwdLp ++e yfFs+r+ ky++g+r+nr+t sgyWkatg dk++ + +lv Tp4g15820 14 LPPGFRFHPTDEELVVQYLRRKVTGLPLPA-SVIPEIDICRADPWDLPGD---CDSERYFFSTREAKYPNGNRSNRSTGSGYWKATGIDKQIGK---KLV 106 79**************************.99***********44...47899*******************************77...89 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kktLvfykg+ p+g++t+Wv+heyrl Tp4g15820 107 GMKKTLVFYKGKPPNGTRTNWVLHEYRL 134 **************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-59	11	157	IPR003441	NAC domain
PROSITE profile	PS51005	57.424	14	157	IPR003441	NAC domain
Pfam	PF02365	4.7E-27	15	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MEKRSFIKNR GLRLPPGFRF HPTDEELVVQ YLRRKVTGLP LPASVIPEID ICRADPWDLP 60 GDCDSERYFF STREAKYPNG NRSNRSTGSG YWKATGIDKQ IGKKLVGMKK TLVFYKGKPP 120 NGTRTNWVLH EYRLFDSKQE SYKGENKNWV LCRVFLKKRS NNKRREDEKE SKEEKESDDD 180 DANNKSTCPI IFYDFMTKDE KRKRFCDLNL TPTCCCCSSS SSPSSSVCSS ALTQTSSIND 240 SDYHEEISCR ENKFCLFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-53	12	163	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-53	12	163	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-53	12	163	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-53	12	163	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-53	12	163	18	174	NAC domain-containing protein 19
3swm_B	5e-53	12	163	18	174	NAC domain-containing protein 19
3swm_C	5e-53	12	163	18	174	NAC domain-containing protein 19
3swm_D	5e-53	12	163	18	174	NAC domain-containing protein 19
3swp_A	5e-53	12	163	18	174	NAC domain-containing protein 19
3swp_B	5e-53	12	163	18	174	NAC domain-containing protein 19
3swp_C	5e-53	12	163	18	174	NAC domain-containing protein 19
3swp_D	5e-53	12	163	18	174	NAC domain-containing protein 19
4dul_A	4e-53	12	163	15	171	NAC domain-containing protein 19
4dul_B	4e-53	12	163	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269\|PubMed:24243147}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g15820

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013634266.1	1e-140	PREDICTED: NAC domain-containing protein 41-like
Swissprot	O22798	1e-117	NAC41_ARATH; NAC domain-containing protein 41
TrEMBL	A0A3N6R1Y6	1e-139	A0A3N6R1Y6_BRACR; Uncharacterized protein
STRING	Bo4g181990.1	1e-139	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1806	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.1	1e-118	NAC domain containing protein 41

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]