PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g16710

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

M-type_MADS

Protein Properties

Length: 179aa MW: 20366.2 Da PI: 8.8355

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g16710	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.6	1.9e-19	12	57	4	49
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ rqvtfskRr+g++KKA+EL +LC+ae +++fs+ gk + y Tp4g16710 12 QDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSY 57 56778**********************************9996665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.02	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.11E-26	1	71	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.1E-32	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.6E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.0E-23	12	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.6E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.6E-19	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MGRRKIKMEM VQDMNTRQVT FSKRRTGLFK KASELATLCN AELGIVVFSP GGKPFSYGKP 60 NLDAVTERFM RECDDSDSGG EEGRCNKNIP KLKKMNERLD FLNQEIEAEK KRGEKAQENF 120 ESAGDERFKK PIEKLTIDEL KEYNDKLQTV HDRIQGQISQ MQASSSLMLL LGNNKAPAE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-15	1	89	1	84	MEF2 CHIMERA
6byy_B	1e-15	1	89	1	84	MEF2 CHIMERA
6byy_C	1e-15	1	89	1	84	MEF2 CHIMERA
6byy_D	1e-15	1	89	1	84	MEF2 CHIMERA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g16710

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC004077	1e-153	AC004077.3 Arabidopsis thaliana chromosome 2 clone T31E10 map ve016, complete sequence.
GenBank	AC004481	1e-153	AC004481.3 Arabidopsis thaliana chromosome 2 clone F13P17 map ve016, complete sequence.
GenBank	CP002685	1e-153	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBank	DQ446598	1e-153	DQ446598.1 Arabidopsis thaliana clone pENTR221-At2g34440 MADS-box family protein (At2g34440) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410589.1	1e-101	agamous-like MADS-box protein AGL29
Swissprot	O64703	1e-96	AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBL	V4MAC2	1e-100	V4MAC2_EUTSA; Uncharacterized protein
STRING	XP_006410589.1	1e-101	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	1e-92	AGAMOUS-like 29

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]