PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g17000
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NF-YA
Protein Properties Length: 199aa    MW: 22597.1 Da    PI: 9.2874
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g17000genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.71.4e-3198154158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep++VNaKQy++Il+RRq+Rakle++++  +ks+kpy+heSRh hA+rRpRg+gGrF
  Tp4g17000  98 EEPVFVNAKQYHGILRRRQSRAKLEARDRA-IKSKKPYMHESRHLHAIRRPRGCGGRF 154
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-3496157IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.1897157IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-2699154IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.8E-24100122IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860102122IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.8E-24131154IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MTSSVHELSD NNESHKKQEE RPDSQTRPPV PSGRSSETID TSSVYSEPMA HGLYPYPDPY  60
YRSVFAQQAY HPHPFPGVQL QLMGIQQQGV PLQCDAIEEP VFVNAKQYHG ILRRRQSRAK  120
LEARDRAIKS KKPYMHESRH LHAIRRPRGC GGRFLNAKKK NGDRKEEEEE EEANSDENAS  180
EASSSLRSKK SVMAPNGRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-2097161165NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g17000
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533790.0AK353379.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-41-M24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410622.11e-128nuclear transcription factor Y subunit A-4
RefseqXP_006410623.11e-128nuclear transcription factor Y subunit A-4
SwissprotQ8VY641e-125NFYA4_ARATH; Nuclear transcription factor Y subunit A-4
TrEMBLE4MXY21e-126E4MXY2_EUTHA; mRNA, clone: RTFL01-41-M24
TrEMBLV4NYQ91e-126V4NYQ9_EUTSA; Uncharacterized protein
STRINGXP_006410622.11e-127(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41682756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34720.11e-113nuclear factor Y, subunit A4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]