PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g17110

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

WRKY

Protein Properties

Length: 423aa MW: 45533.9 Da PI: 5.4241

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g17110	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.9	6.7e-31	210	268	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Tp4g17110 210 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 268 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.3E-31	203	270	IPR003657	WRKY domain
PROSITE profile	PS50811	33.109	204	270	IPR003657	WRKY domain
SuperFamily	SSF118290	2.75E-26	207	270	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	209	269	IPR003657	WRKY domain
Pfam	PF03106	8.7E-26	211	268	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MDNFQGDLTD VVRGIGSGHL SSSPGPPEGP SPSSLSSPPI SDLHVDFPSV ASCQINPFGD 60 PFVSMNDPLL NLTANSGYFS GAGDSNSFAV LPKVPEDDHI KSQCSVFPRI RISQSNIIHD 120 TPKCISPAMA VSAAAGASPW GMINADTTNS PRNCLLVDNN NNTSSSSQIQ ISSSPRNFGI 180 KRRKSQAKKV VCIPAPAAMN SRSSGEVVPS DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG 240 CSARKQVERS RTDPNMLVIT YTSEHNHPWP TQRNALAGST RSSSSSSTNP SFKSSTATAN 300 ANATTSASSR VSQNKDETNK SHLPSSSTPP SPYVAAAVKE ENVEERQDNM EFGNDVDDTY 360 RPEFQHQPED FFADLDELEE DSITMLLSQG FSGDNSGGGN LENKTTIPNV FSDFFDDDSS 420 RSL

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MDNFQGDLTD VVRGIGSGHL SSSPGPPEGP SPSSLSSPPI SDLHVDFPSV ASCQINPFGD  60
PFVSMNDPLL NLTANSGYFS GAGDSNSFAV LPKVPEDDHI KSQCSVFPRI RISQSNIIHD  120
TPKCISPAMA VSAAAGASPW GMINADTTNS PRNCLLVDNN NNTSSSSQIQ ISSSPRNFGI  180
KRRKSQAKKV VCIPAPAAMN SRSSGEVVPS DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG  240
CSARKQVERS RTDPNMLVIT YTSEHNHPWP TQRNALAGST RSSSSSSTNP SFKSSTATAN  300
ANATTSASSR VSQNKDETNK SHLPSSSTPP SPYVAAAVKE ENVEERQDNM EFGNDVDDTY  360
RPEFQHQPED FFADLDELEE DSITMLLSQG FSGDNSGGGN LENKTTIPNV FSDFFDDDSS  420
RSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	3e-25	184	271	2	80	Disease resistance protein RRS1
5w3x_D	3e-25	184	271	2	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g17110

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ012167	0.0	FJ012167.1 Brassica napus WRKY35 transcription factor (WRKY35) mRNA, complete cds.
GenBank	KC246578	0.0	KC246578.1 Brassica napus WRKY transcription factor 35.1 (WRKY35.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018439076.1	0.0	PREDICTED: probable WRKY transcription factor 35
Swissprot	O64747	0.0	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A0A7RI83	0.0	A0A0A7RI83_BRAOC; WRKY53 protein
TrEMBL	A0A0D3C476	0.0	A0A0D3C476_BRAOL; Uncharacterized protein
STRING	XP_010504968.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3085	28	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	1e-152	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]