PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g17770
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family BBR-BPC
Protein Properties Length: 229aa    MW: 25102 Da    PI: 10.784
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g17770genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind254.46.9e-7838229104301
  GAGA_bind 104 gtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvs 202
                 t+ id +q    pq  ++a++ +  +  l  + ++ +++++++ ++k+++ ++ k++++k+ ++k+  +++k+ +k++s  ++ k+ekk+ d++++  s
  Tp4g17770  38 RTTGIDLSQV---PQE-NPAEGvMVPQVRLFPPSTKGSRNDMETMRQKSTNLSPLKALKPKQPRTKR--SAPKSPKKTPSI-PEIKREKKNPDINIDISS 130
                5555555554...332.22333466666777777778888888888888888888888777777777..667777888887.69**************** PP

  GAGA_bind 203 lDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                +D s++P+PvCsCtG++++CYkWG+GGWqS+CCt+++S+yPLP+st+r+gaR+agrKmS+ga+ klL +La+eGy+l  pvDLk+hWA+HGtnkfvti+
  Tp4g17770 131 FDVSGVPPPVCSCTGVPKVCYKWGMGGWQSSCCTISVSTYPLPMSTTRPGARLAGRKMSNGAYVKLLMRLAGEGYNLTLPVDLKNHWARHGTNKFVTIK 229
                **************************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012267.5E-931229IPR010409GAGA-binding transcriptional activator
PfamPF062173.0E-6863229IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MNSYPSRSHM QSATGASKGT GLPTSNAHWF NSYFPVPRTT GIDLSQVPQE NPAEGVMVPQ  60
VRLFPPSTKG SRNDMETMRQ KSTNLSPLKA LKPKQPRTKR SAPKSPKKTP SIPEIKREKK  120
NPDINIDISS FDVSGVPPPV CSCTGVPKVC YKWGMGGWQS SCCTISVSTY PLPMSTTRPG  180
ARLAGRKMSN GAYVKLLMRL AGEGYNLTLP VDLKNHWARH GTNKFVTIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g17770
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410714.11e-143protein BASIC PENTACYSTEINE7
SwissprotO822861e-125BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLV4MAM51e-142V4MAM5_EUTSA; Uncharacterized protein
STRINGXP_006410714.11e-142(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136742127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.41e-128basic pentacysteine 7