PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g18590
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GeBP
Protein Properties Length: 279aa    MW: 31944.2 Da    PI: 8.8194
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g18590genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57382.94.7e-2664157396
     DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                ++++ws +De+++L+G++d++ k+++ + +d+d fy ++k+s++ +++k+ql +Ki  +Kk+f + ++     +  s  ++hd+++++ls++iW
  Tp4g18590  64 SEMIWSRDDELLILKGIVDYQIKKKSRYDSDWDSFYYYIKDSLKTNFTKQQLADKIAIFKKRFIRYQEGFGGRNGSSTINPHDDEVLQLSMIIW 157
                789**********************99999***************************************99999999***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.3E-2066157IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSRGGDSTNY NSDEDIEIQV INNPVPLSSL TRKRDDHIPI AELSRRKQLR TTIRLVESSP  60
ASASEMIWSR DDELLILKGI VDYQIKKKSR YDSDWDSFYY YIKDSLKTNF TKQQLADKIA  120
IFKKRFIRYQ EGFGGRNGSS TINPHDDEVL QLSMIIWPFA STLKMVQTSV LNSSKYVPRV  180
LRGQVINIST EINNVEKDKS EEDGVDEFCA MQNALGETTL FQSIDQYQQK KLLQNLENLG  240
APRKKELTDE WKALLVEDAR VKIKKQSFSA KLAFAGLSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g18590
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124401528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.12e-25DNA-binding storekeeper protein-related transcriptional regulator