PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g18600

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GeBP

Protein Properties

Length: 333aa MW: 38645.1 Da PI: 5.0594

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g18600	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	96.1	3.4e-30	68	162	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++r w+++D +++L ++d++++t+ s+ +d+dafy ++k+ i+ ++sk+ql++Kir+LKk+f +++++ ++gk sf+ ++d++if+ls +iW+ Tp4g18600 68 AKRFWTKNDALIILGSIVDYEKETKLSYRSDWDAFYGYMKDFIETDFSKKQLIDKIRHLKKRFFENQARFNNGKGLSFTDTEDDDIFKLSIIIWD 162 78********************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.7E-23	69	162	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MVVRKRLRDY SSDSNSDRFK IRHKGRTMPS SPVRRMHEED VFAMEAMLRR IKQQKTTPKT 60 LVSSSSTAKR FWTKNDALII LGSIVDYEKE TKLSYRSDWD AFYGYMKDFI ETDFSKKQLI 120 DKIRHLKKRF FENQARFNNG KGLSFTDTED DDIFKLSIII WDPNETECAS NENIDKAEDV 180 PSGEHERVDE NMDQARIDVP YVEHEQVNAN VDQENDVPSV EHGQVNENMD QEESVPYSEG 240 EPVSNLSFET DNGEKKKNEE DAVDEFYALQ DALEATTWFQ SVGKYQQKKM IQNLKTLGAQ 300 RRKELAGEWK ALLAEEMKLY AKKLTFSAKL ASA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269\|PubMed:21875893}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g18600

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018484336.1	1e-130	PREDICTED: GLABROUS1 enhancer-binding protein-like 3 isoform X5
Swissprot	Q9SJM4	1e-81	STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBL	A0A3P6CR44	1e-126	A0A3P6CR44_BRAOL; Uncharacterized protein (Fragment)
STRING	Bo4g186180.1	1e-125	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12440	15	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	4e-84	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]