PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g18750
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 187aa    MW: 20216.6 Da    PI: 4.4151
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g18750genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-171464255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr+++++ +Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  Tp4g18750 14 LYRGVRQRRNSDKWVSEIREPR----KpNRIWLGTFSTPEMAAIAYDVAALALKG 64
               69******************94....478***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.29E-281374No hitNo description
PfamPF008473.8E-111364IPR001471AP2/ERF domain
PROSITE profilePS5103221.1271472IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-271473IPR001471AP2/ERF domain
SMARTSM003801.4E-311478IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-191474IPR016177DNA-binding domain
PRINTSPR003674.7E-51526IPR001471AP2/ERF domain
PRINTSPR003674.7E-53854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAGTSKDNGG RHPLYRGVRQ RRNSDKWVSE IREPRKPNRI WLGTFSTPEM AAIAYDVAAL  60
ALKGTQTELN FPNSVSSLPV PASMSPGDIQ AAAASAAAAF GAARDAIVMA NNNSATSGVE  120
RSNMMVMDAS YENTNAFMDE DLIFDMPNVL MNMAEGMLLS PPHQPAFDAA YDADGYTAAD  180
DYLWNFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-13774274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g18750
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410822.11e-105ethylene-responsive transcription factor ERF024
SwissprotQ9SJR08e-96ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLV4LNX41e-104V4LNX4_EUTSA; Uncharacterized protein
STRINGXP_006410822.11e-104(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.11e-74ERF family protein