PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g19240
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 742aa    MW: 81986.6 Da    PI: 6.3373
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g19240genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-0861103347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
        Tp4g19240  61 AWTHQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 103
                      6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-1053108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-556106IPR009057Homeodomain-like
PROSITE profilePS5129313.5257108IPR017884SANT domain
SMARTSM007175.1E-658106IPR001005SANT/Myb domain
PfamPF002493.1E-661103IPR001005SANT/Myb domain
CDDcd001671.21E-561104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MLKPISHYCA MQAEKEVLLN TEGPIDEGHI INQNSNPNIA SSASISVAQF PAKKPTRQWA  60
AWTHQEEESF FTALRQVGKN FEKITSRVQS KNKDQVRHYY YRLVRRMNKL LGPELSLDAK  120
NPKDTNAAML RWWSLLEKYS CKASKLHLKP RRFKLFLEAL EHQLLKDRRK STRKRACQEE  180
TFSSASLGNI SSHSRERGLD NRPFKLILCD SQTVKKLGPG RASTKHGDSL GFSLGDEKED  240
TAFGRGGRQR RKQAGFRKWE KAAIDGVSLV ADAAEHLERT SIDKDMDGQK DLGPTRYLTG  300
KSPLSLCSSG EVPHSDANMQ FSAKLKLQLF PIDECTRRSL EMDKHNPHLE LTLSNRKKIS  360
SVLEHLNRKW GSSSCATGEL ILLPYNARKE TVTCHQRWTN DSFLSAAEVH SMVGSPSIFR  420
LRYGWFVHDA SGSSIYQIPT SASCPSLEDD MNVDGANEVN TLLTESGPLA VPSTTEQAPS  480
VVCASGEIHD RPAESRDNYE PASATNITPF EHMSSGNGVS AGEWADSLTN ISIGDLLSEV  540
PNDIDSDRVA TEGSHCLLRD VPFASDSFDA AIAAHILRHQ NKPSALLPMT TGSSSIWDDE  600
ETRDGFSFQK NRLADSPEFA NVASPGGVGR VNGDPSQFLE ATSGDEEPCN PPGQQGDPME  660
EGPTDPHTMD SPEKTHCGLA DVYWPDSLGP LDLDIRSSKY SEDLILSESL GGLSRLIATS  720
LDAFQNCSLF GFDNKKDKSN MV
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g19240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2269780.0AK226978.1 Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL09-39-I17.
GenBankAY0640680.0AY064068.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
GenBankAY0963760.0AY096376.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024003914.10.0TSL-kinase interacting protein 1 isoform X1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLV4LP170.0V4LP17_EUTSA; Uncharacterized protein
STRINGXP_006410872.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96332124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1