PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g19280

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

TCP

Protein Properties

Length: 190aa MW: 20417.1 Da PI: 7.0746

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g19280	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.1	7.9e-35	40	113	8	82
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssa 82 ++++hTkv+gR+RRvR++a+ aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg+++++++ + s ss Tp4g19280 40 SKDRHTKVNGRGRRVRMPALAAARIFQLTRELGHRSDGETIEWLLNQAEPSIIAATGSGNNPSELMsM--SVDSSP 113 79********************************************************8888833311..111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-29	39	116	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.009	40	94	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MVFHKLSTTE SSLNAVAPEP LPQTQIAVSK SSTGRVSAAS KDRHTKVNGR GRRVRMPALA 60 AARIFQLTRE LGHRSDGETI EWLLNQAEPS IIAATGSGNN PSELMSMSVD SSPQMMFAMV 120 APQTQSHMQP PSCRLDLSQP IGVQYPVNGY SHMPFTAMLL QPMNTAAATA EADVEIAAEE 180 RRQSEALGGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g19280

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410877.2	2e-97	transcription factor TCP11
Swissprot	Q9SJK7	2e-64	TCP11_ARATH; Transcription factor TCP11
TrEMBL	V4LP21	5e-96	V4LP21_EUTSA; Uncharacterized protein
STRING	XP_006410877.1	9e-97	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15265	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	5e-66	TCP family protein