PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g19320
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 113aa    MW: 13114.9 Da    PI: 10.7957
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g19320genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.6e-08249448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                     WT +E  +lvd++  +G g W+ I + +     +Rt+ +++++w+++l
        Tp4g19320  2 WTVDEVVKLVDGISHFGVGKWTDIRNLFFhsaSHRTPVDIRDKWRNLL 49
                     ****************************99**9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd116601.24E-18150No hitNo description
PROSITE profilePS5129417.341153IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-11250IPR009057Homeodomain-like
PfamPF139212.8E-8257No hitNo description
SuperFamilySSF466892.44E-17259IPR009057Homeodomain-like
SMARTSM007175.9E-6251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MWTVDEVVKL VDGISHFGVG KWTDIRNLFF HSASHRTPVD IRDKWRNLLK ASYTNKHNGD  60
EEAEEKRRSA SRPIPKDILD RVRELASLHS KSLCFDHGSS RSQSTSRKKK KKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112RKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g19320
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024003969.13e-54uncharacterized protein LOC18026736 isoform X1
RefseqXP_024003970.12e-54uncharacterized protein LOC18026736 isoform X2
RefseqXP_024003971.12e-54uncharacterized protein LOC18026736 isoform X2
TrEMBLA0A397ZW337e-54A0A397ZW33_BRACM; Uncharacterized protein
TrEMBLV4MIC45e-53V4MIC4_EUTSA; Uncharacterized protein
STRINGXP_006410880.18e-54(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92001927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.12e-22TRF-like 3