PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g19440

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

S1Fa-like

Protein Properties

Length: 76aa MW: 8056.74 Da PI: 10.9176

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g19440	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	128.4	2e-40	8	74	2	68
S1FA 2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavP 68 ++a++eakGlnPGlivllv+ggll++fl++ny++y+yaqknlP +kkkPvskkklkreklkqGv+vP Tp4g19440 8 GKAAAEAKGLNPGLIVLLVIGGLLVTFLIANYAMYMYAQKNLPSKKKKPVSKKKLKREKLKQGVPVP 74 57899*************************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	1.1E-36	12	74	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MSSEGSAGKA AAEAKGLNPG LIVLLVIGGL LVTFLIANYA MYMYAQKNLP SKKKKPVSKK 60 KLKREKLKQG VPVPSG

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g19440

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF372892	2e-77	AF372892.1 Arabidopsis thaliana At2g37120/T2N18.12 mRNA, complete cds.
GenBank	AY085439	2e-77	AY085439.1 Arabidopsis thaliana clone 1517 mRNA, complete sequence.
GenBank	BT002669	2e-77	BT002669.1 Arabidopsis thaliana At2g37120/T2N18.12 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_565859.1	2e-26	S1FA-like DNA-binding protein
Swissprot	Q42337	1e-27	S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBL	A0A178VX36	4e-25	A0A178VX36_ARATH; Uncharacterized protein
STRING	AT2G37120.1	6e-26	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2823	27	69