PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g20410
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 297aa    MW: 33376.9 Da    PI: 5.4415
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g20410genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285e-092873346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     rWT+eE +++ +a + + ++   +W ++a++++ g+t  +++  ++ 
        Tp4g20410 28 RWTAEENKKFENALAFYDKDtpdRWFKVAAMLP-GKTVGDVIKQYRE 73
                     9********************************.******9999986 PP
2Myb_DNA-binding48.61.9e-15140184347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky
        Tp4g20410 140 PWTEEEHRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 184
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-42374IPR009057Homeodomain-like
PROSITE profilePS512939.4472479IPR017884SANT domain
SMARTSM007171.9E-102577IPR001005SANT/Myb domain
SuperFamilySSF466891.65E-112781IPR009057Homeodomain-like
PfamPF002494.3E-72873IPR001005SANT/Myb domain
CDDcd001675.23E-82874No hitNo description
PROSITE profilePS5129421.845133189IPR017930Myb domain
SuperFamilySSF466891.66E-17135188IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-18136188IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.7E-13137184IPR009057Homeodomain-like
SMARTSM007178.7E-14137187IPR001005SANT/Myb domain
PfamPF002497.7E-13140184IPR001005SANT/Myb domain
CDDcd001671.85E-11140185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MNRGIEIMSP ATYLETSNWL FQENRGTRWT AEENKKFENA LAFYDKDTPD RWFKVAAMLP  60
GKTVGDVIKQ YRELEEDVSD IEAGLIPIPG YASDSFTLDW GGYDAGNHGF NMNGYYFAAA  120
GGKRGSAARA AEHERKKGVP WTEEEHRQFL MGLKKYGKGD WRNIARNFVT TRTPTQVASH  180
AQKYFIRQVN GGKDKRRSSI HDITTVNIPD SPDAAATDTT TANAPCSPPS LGGSQRETSD  240
QWEGQTLYDE TATAFYNQNA FQETLIGMSS TPYMAKLQEQ SFLNASQFES YNAYLQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-162691873RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g20410
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1181350.0AK118135.1 Arabidopsis thaliana At2g38090 mRNA for putative MYB family transcription factor, complete cds, clone: RAFL19-43-J04.
GenBankAY5195290.0AY519529.1 Arabidopsis thaliana MYB transcription factor (At2g38090) mRNA, complete cds.
GenBankBT0061220.0BT006122.1 Arabidopsis thaliana clone U50930 putative MYB family transcription factor (At2g38090) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433585.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H75e-97DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLV4MIQ70.0V4MIQ7_EUTSA; Uncharacterized protein
STRINGXP_006411010.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.10.0MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]