PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g20580
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family G2-like
Protein Properties Length: 344aa    MW: 39404.9 Da    PI: 8.9564
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g20580genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.3e-3255108255
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                prlrWtp+LH rFv+ave+LGG+e+AtPk ++++m++kgL+++hvkSHLQ+YR+
  Tp4g20580  55 PRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS 108
                8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.27351111IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-2951109IPR009057Homeodomain-like
SuperFamilySSF466891.97E-1453109IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-2255110IPR006447Myb domain, plants
PfamPF002491.2E-956107IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MISSMEGGEK ADREEDEEEE EEEGEREESK VSSNSTVEEI DKKTKVRPYV RSKVPRLRWT  60
PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK SHLQMYRSKK MDDQGQVIAD  120
HRHFMETSTD RNVYKLSQLP MFRGYNINHN HDSPFRYGSK LSNVSLWNSS SHETNRSLID  180
SPGLIRGSSI SNNIRGNDYS TNNRSFQNIV YSSSISNHLP KLRHNHQERA NSVTFNSIQE  240
HSRTFEKFKI GLEESTNHAY CNKTRGKRNA STSIDLDLDL SLNLRVPEKT IMEETETAAT  300
TTDQRLSLSL CSGSSSWKKS RVIKTDEEDR TVKIGQASTL DLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-1656110357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-1656110357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-1656110357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-1656110357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g20580
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181364.20.0myb-like HTH transcriptional regulator family protein
TrEMBLA0A178VYP60.0A0A178VYP6_ARATH; Uncharacterized protein
TrEMBLQ8GYE40.0Q8GYE4_ARATH; Myb-like HTH transcriptional regulator family protein
STRINGAT2G38300.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-168G2-like family protein