PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g20670
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 254aa    MW: 29045.2 Da    PI: 6.3233
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g20670genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-2069127155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                ++++GVr++  +g+WvAeIr+p++ +g    ++kr +lg+f+ta eAa a+++a+ +++g
  Tp4g20670  69 CRFRGVRQRV-WGKWVAEIREPVNhRGgnsnRSKRLWLGTFDTAAEAALAYDKAASAMYG 127
                689*****99.**********999955677555**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-1469127IPR001471AP2/ERF domain
CDDcd000187.10E-2869135No hitNo description
SuperFamilySSF541712.35E-1970136IPR016177DNA-binding domain
PROSITE profilePS5103222.22170135IPR001471AP2/ERF domain
SMARTSM003801.2E-3170141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-2870136IPR001471AP2/ERF domain
PRINTSPR003679.8E-107182IPR001471AP2/ERF domain
PRINTSPR003679.8E-10101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MQKEDNGSRQ SSSASVESSR RRRRPAEPVE ATLSRWEKEE GLEKVRRVQA KGSKKGCMRG  60
KGGPENPVCR FRGVRQRVWG KWVAEIREPV NHRGGNSNRS KRLWLGTFDT AAEAALAYDK  120
AASAMYGRYA RLNFPKELGD VSGGEMKKND EPECSRSYWL ETNNVSETSN GIIKRKDEKD  180
HLVYDYTIEL GQEETENLDP MTDNEIVKSM VYPAVKTEED YTFDRFELDN GLLYNESGYY  240
HGGGFDPYSE YFGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-16701431480Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:21069430}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00298DAPTransfer from AT2G38340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g20670
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143395.11e-124PREDICTED: dehydration-responsive element-binding protein 2E
SwissprotO809171e-104DRE2E_ARATH; Dehydration-responsive element-binding protein 2E
TrEMBLA0A078JBN61e-124A0A078JBN6_BRANA; BnaC04g53380D protein
STRINGBra005113.1-P1e-124(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142491823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.11e-92ERF family protein
Publications ? help Back to Top
  1. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]